RNA id: TU398231


Basic Information

Item Value
RNA id TU398231
length 296
lncRNA type intronic
GC content 0.41
exon number 2
gene id G351843
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40690336 ~ 40691039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaAATTAgcactgtctctatgtctgttgaAATTAGCACTGTGTCTAGGTCTGTTGAAATTAgcactgtctctatgtctgttgaAATTAgcactgtctctatgtctgttgaAATTAGCACTGTCTCTAGGTCTGTTGAAAGTAGCACTGTCTCTAGGTCTGTTGAAATTAGCACTGTCTCTAGGTCTGTTGAAAGTAGCACTGTCTCTAGGTCTGTTGAAATTAGCACTGTCTCTAGGTCTGTTGAAATTAGCACTGTCTCTAGGTCTGTTGAAAGTAGCACTGTGTCTAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398228 lncRNA upstream 2351 40687346 ~ 40687985 (+) True G351840
TU398212 lncRNA upstream 12166 40677676 ~ 40678170 (+) False G351826
TU398211 lncRNA upstream 12229 40677593 ~ 40678107 (+) False G351826
TU398213 lncRNA upstream 12229 40677676 ~ 40678107 (+) True G351826
TU398214 lncRNA upstream 15497 40674292 ~ 40674839 (+) True LOC110521109
TU398235 lncRNA downstream 8037 40699076 ~ 40699298 (+) True G351847
TU398196 lncRNA downstream 24617 40715656 ~ 40716059 (+) True G351816
TU398450 lncRNA downstream 40711 40731750 ~ 40732661 (+) True si:ch211-63o20.7
TU398473 lncRNA downstream 45198 40736237 ~ 40736542 (+) True G351940
TU398495 lncRNA downstream 67456 40758495 ~ 40764040 (+) True G351960
XM_036976314.1 mRNA upstream 15759 40650654 ~ 40674577 (+) False LOC110521109
XM_036976315.1 mRNA upstream 15759 40650654 ~ 40674577 (+) False LOC110521109
XM_036976312.1 mRNA upstream 15759 40650655 ~ 40674577 (+) False LOC110521109
XM_021598373.2 mRNA upstream 59515 40626614 ~ 40630821 (+) True paqr8
NM_001124651.1 mRNA upstream 60652 40626393 ~ 40629684 (+) False paqr8
XM_021601088.2 mRNA downstream 17623 40708662 ~ 40714024 (+) False LOC110522626
XM_021601089.2 mRNA downstream 18253 40709292 ~ 40714024 (+) True LOC110522626
XM_036976317.1 mRNA downstream 30487 40721526 ~ 40732294 (+) False si:ch211-63o20.7
XM_036976319.1 mRNA downstream 30487 40721526 ~ 40732344 (+) False si:ch211-63o20.7
XM_036976318.1 mRNA downstream 30487 40721526 ~ 40732351 (+) False si:ch211-63o20.7
TU397710 other upstream 553563 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 553563 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1300862 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1300901 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1785562 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 299120 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 519208 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 520074 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 675162 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1433637 42124676 ~ 42125759 (+) True G353125

Expression Profile