RNA id: TCONS_00033252


Basic Information

Item Value
RNA id TCONS_00033252
length 478
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_015345
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 18332763 ~ 18335711 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTATCCATGATccatctacactgaaaaaagtgatttTGGAGAGCGGTAAATATAATCTGTGGAAACCATATAAAATTTACTTGATTATTGCAGCCAGCCAAGGAATTCAAAAGTAATGGGTAAATTCTACATATGCTACCCATTCGTCAACAGTAACAACCATCACATAGAAAAATTCAGTAAAGTATACCCCCAAACCGTGAGTTTATTGCTTGAAATTGCGCATGCGTCAGCCCGCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGTAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGA

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030727 lncRNA upstream 617943 17707492 ~ 17714820 (+) True XLOC_015343
TCONS_00033250 lncRNA upstream 718893 17611447 ~ 17613870 (+) True XLOC_015341
TCONS_00033511 lncRNA upstream 881330 17448148 ~ 17451433 (+) True XLOC_015336
TCONS_00033509 lncRNA upstream 973743 17335817 ~ 17359020 (+) False XLOC_015335
TCONS_00033510 lncRNA upstream 973743 17335845 ~ 17359020 (+) True XLOC_015335
TCONS_00030729 lncRNA downstream 70694 18405569 ~ 18406117 (+) True XLOC_015346
TCONS_00030732 lncRNA downstream 653546 18988421 ~ 18990519 (+) False XLOC_015348
TCONS_00030733 lncRNA downstream 655302 18990177 ~ 18990701 (+) True XLOC_015348
TCONS_00030741 lncRNA downstream 902488 19237363 ~ 19243344 (+) True XLOC_015351
TCONS_00030748 lncRNA downstream 1224199 19559074 ~ 19562491 (+) True XLOC_015355
TCONS_00030728 mRNA upstream 309998 18017000 ~ 18022765 (+) True XLOC_015344
TCONS_00030722 mRNA upstream 757158 17525355 ~ 17575605 (+) False XLOC_015339
TCONS_00030725 mRNA upstream 757183 17569644 ~ 17575580 (+) True XLOC_015339
TCONS_00030724 mRNA upstream 773640 17556177 ~ 17559123 (+) False XLOC_015339
TCONS_00030723 mRNA upstream 790104 17540720 ~ 17542659 (+) True XLOC_015340
TCONS_00030731 mRNA downstream 653532 18988407 ~ 18992350 (+) False XLOC_015348
TCONS_00030734 mRNA downstream 769356 19104231 ~ 19144467 (+) True XLOC_015349
TCONS_00030735 mRNA downstream 829090 19163965 ~ 19215112 (+) False XLOC_015350
TCONS_00030736 mRNA downstream 860966 19195841 ~ 19214637 (+) False XLOC_015350
TCONS_00030737 mRNA downstream 861096 19195971 ~ 19209691 (+) True XLOC_015350
TCONS_00030726 other upstream 674687 17657958 ~ 17658076 (+) True XLOC_015342
TCONS_00030715 other upstream 1502999 16829689 ~ 16829764 (+) True XLOC_015330
TCONS_00030714 other upstream 1507944 16824759 ~ 16824819 (+) True XLOC_015329
TCONS_00030677 other upstream 2171194 16160943 ~ 16161569 (+) False XLOC_015314
TCONS_00030675 other upstream 2464223 15868425 ~ 15868540 (+) True XLOC_015313
TCONS_00030730 other downstream 167433 18502308 ~ 18502424 (+) True XLOC_015347
TCONS_00030744 other downstream 1170415 19505290 ~ 19507193 (+) True XLOC_015352
TCONS_00030745 other downstream 1184210 19519085 ~ 19519182 (+) True XLOC_015353
TCONS_00030749 other downstream 1240184 19575059 ~ 19575156 (+) True XLOC_015356
TCONS_00030752 other downstream 1293822 19628697 ~ 19628794 (+) True XLOC_015360

Expression Profile

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