RNA id: TU398760


Basic Information

Item Value
RNA id TU398760
length 313
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G352173
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41012205 ~ 41012517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaaaattattcagcccctttactttcagtggcgcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcgctgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398756 lncRNA upstream 350 41009555 ~ 41011855 (+) False G352169
TU398755 lncRNA upstream 350 41011570 ~ 41011855 (+) True G352169
TU398751 lncRNA upstream 1812 41009555 ~ 41010393 (+) False G352169
TU398740 lncRNA upstream 17227 40994676 ~ 40994978 (+) True G352158
TU398717 lncRNA upstream 23563 40988427 ~ 40988642 (+) True G352135
TU398766 lncRNA downstream 10270 41022787 ~ 41023049 (+) True G352179
TU398768 lncRNA downstream 14430 41026947 ~ 41101711 (+) True G352181
TU398790 lncRNA downstream 42763 41055280 ~ 41059249 (+) False G352194
TU398785 lncRNA downstream 42971 41055488 ~ 41059249 (+) False G352194
TU398786 lncRNA downstream 42971 41055488 ~ 41059249 (+) False G352194
XM_036976333.1 mRNA upstream 67201 40918240 ~ 40945004 (+) False abcd4
XR_005051447.1 mRNA downstream 25720 41038237 ~ 41041039 (+) True LOC118964399
XM_036976342.1 mRNA downstream 58965 41071482 ~ 41085688 (+) False LOC110521114
XM_021601101.2 mRNA downstream 414363 41426880 ~ 41445268 (+) True LOC110522636
XM_036976355.1 mRNA downstream 636275 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 652085 41664602 ~ 41675680 (+) True LOC110522642
TU398718 other upstream 21700 40990159 ~ 40990505 (+) True G352136
TU397710 other upstream 875432 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 875432 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1622731 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1622770 39388141 ~ 39389435 (+) False G350665
TU398979 other downstream 197730 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 198596 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 353684 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1112159 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 1307183 42319700 ~ 42328637 (+) False LOC118964483

Expression Profile