RNA id: TU399046


Basic Information

Item Value
RNA id TU399046
length 222
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G352386
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41318600 ~ 41318821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccacatcaccaacaaactgtcatggtccaaacacaccaagccagttgtgaagagggcacgacacagtacatcactggggaaaaGCTTCCTGCTATCAAGGacttatatacagtggggagaacaagtatttgatacactggcgattttgcaggttttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacacttcaactgtgagagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399045 lncRNA upstream 1529 41316635 ~ 41317071 (+) True G352385
TU399044 lncRNA upstream 2215 41316013 ~ 41316385 (+) True G352384
TU399032 lncRNA upstream 15399 41294017 ~ 41303201 (+) True G352376
TU399035 lncRNA upstream 19367 41291969 ~ 41299233 (+) True G352377
TU399029 lncRNA upstream 28548 41289736 ~ 41290052 (+) True G352373
TU399049 lncRNA downstream 2232 41321053 ~ 41321338 (+) True G352389
TU399130 lncRNA downstream 13372 41332193 ~ 41332530 (+) True G352457
TU399157 lncRNA downstream 48634 41367455 ~ 41367724 (+) True G352478
TU399160 lncRNA downstream 59741 41378562 ~ 41378887 (+) True G352481
TU399173 lncRNA downstream 103739 41422560 ~ 41422773 (+) True G352493
XM_036976342.1 mRNA upstream 232912 41071482 ~ 41085688 (+) False LOC110521114
XR_005051447.1 mRNA upstream 277561 41038237 ~ 41041039 (+) True LOC118964399
XM_036976336.1 mRNA upstream 373596 40918240 ~ 40945004 (+) False abcd4
XM_021601101.2 mRNA downstream 108059 41426880 ~ 41445268 (+) True LOC110522636
XM_036976355.1 mRNA downstream 329971 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 345781 41664602 ~ 41675680 (+) True LOC110522642
XM_021601116.2 mRNA downstream 357440 41676261 ~ 41681946 (+) True LOC110522643
XM_036976367.1 mRNA downstream 565444 41884265 ~ 41934580 (+) True LOC110522644
TU398983 other upstream 104651 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 107602 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 328095 40990159 ~ 40990505 (+) True G352136
TU397710 other upstream 1181827 40134687 ~ 40136773 (+) False G351441
TU399156 other downstream 47380 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 805855 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 1000879 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 1009059 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 1123934 42442755 ~ 42443381 (+) True G353328

Expression Profile