RNA id: TU399130


Basic Information

Item Value
RNA id TU399130
length 338
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G352457
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41332193 ~ 41332530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTTACTGCTActagcccatacaaacacattgaataacagctAGTCCTTACTGCTActagcccatacaaacacattgaataacagctAGTTCTTACTGCTActagcccatacaaacacattgaataacagctAGTCCTTACTGCTActagcccatacaaacacattgaataacagctAGTCCTTACTGCTactagcccatagaaacacattgaataacagatagtccttactgctactagcccatacaaacacattgaataacagcttCACTTCATGGATGTGTACCCCGGTCTCCCGGTCTCCCGATCTGaaaaacaccactctagctctgacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399049 lncRNA upstream 10855 41321053 ~ 41321338 (+) True G352389
TU399046 lncRNA upstream 13372 41318600 ~ 41318821 (+) True G352386
TU399045 lncRNA upstream 15122 41316635 ~ 41317071 (+) True G352385
TU399044 lncRNA upstream 15808 41316013 ~ 41316385 (+) True G352384
TU399032 lncRNA upstream 28992 41294017 ~ 41303201 (+) True G352376
TU399157 lncRNA downstream 34925 41367455 ~ 41367724 (+) True G352478
TU399160 lncRNA downstream 46032 41378562 ~ 41378887 (+) True G352481
TU399173 lncRNA downstream 90030 41422560 ~ 41422773 (+) True G352493
TU399148 lncRNA downstream 113837 41446367 ~ 41446616 (+) False G352472
TU399149 lncRNA downstream 113837 41446367 ~ 41446759 (+) False G352472
XM_036976342.1 mRNA upstream 246505 41071482 ~ 41085688 (+) False LOC110521114
XR_005051447.1 mRNA upstream 291154 41038237 ~ 41041039 (+) True LOC118964399
XM_036976336.1 mRNA upstream 387189 40918240 ~ 40945004 (+) False abcd4
XM_021601101.2 mRNA downstream 94350 41426880 ~ 41445268 (+) True LOC110522636
XM_036976355.1 mRNA downstream 316262 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 332072 41664602 ~ 41675680 (+) True LOC110522642
XM_021601116.2 mRNA downstream 343731 41676261 ~ 41681946 (+) True LOC110522643
XM_036976367.1 mRNA downstream 551735 41884265 ~ 41934580 (+) True LOC110522644
TU398983 other upstream 118244 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 121195 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 341688 40990159 ~ 40990505 (+) True G352136
TU397710 other upstream 1195420 40134687 ~ 40136773 (+) False G351441
TU399156 other downstream 33671 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 792146 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 987170 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 995350 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 1110225 42442755 ~ 42443381 (+) True G353328

Expression Profile