RNA id: TU399156


Basic Information

Item Value
RNA id TU399156
length 407
RNA type TUCP
GC content 0.48
exon number 1
gene id G352477
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41366201 ~ 41366607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattttgtcttttAAAACACCTAACAAGCACACTTCTAACATTGAAACCTCATACCTcataatgccttgcattacgcCTGGGAAGAACACACGTGCATTTGCTCAACTTgacattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccacatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctcaacttaccccatggccattggctacaagaaacctctaacacaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399130 lncRNA upstream 33671 41332193 ~ 41332530 (+) True G352457
TU399049 lncRNA upstream 44863 41321053 ~ 41321338 (+) True G352389
TU399046 lncRNA upstream 47380 41318600 ~ 41318821 (+) True G352386
TU399045 lncRNA upstream 49130 41316635 ~ 41317071 (+) True G352385
TU399044 lncRNA upstream 49816 41316013 ~ 41316385 (+) True G352384
TU399157 lncRNA downstream 848 41367455 ~ 41367724 (+) True G352478
TU399160 lncRNA downstream 11955 41378562 ~ 41378887 (+) True G352481
TU399173 lncRNA downstream 55953 41422560 ~ 41422773 (+) True G352493
TU399148 lncRNA downstream 79760 41446367 ~ 41446616 (+) False G352472
TU399149 lncRNA downstream 79760 41446367 ~ 41446759 (+) False G352472
XM_036976342.1 mRNA upstream 280513 41071482 ~ 41085688 (+) False LOC110521114
XR_005051447.1 mRNA upstream 325162 41038237 ~ 41041039 (+) True LOC118964399
XM_036976336.1 mRNA upstream 421197 40918240 ~ 40945004 (+) False abcd4
XM_021601101.2 mRNA downstream 60273 41426880 ~ 41445268 (+) True LOC110522636
XM_036976355.1 mRNA downstream 282185 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 297995 41664602 ~ 41675680 (+) True LOC110522642
XM_021601116.2 mRNA downstream 309654 41676261 ~ 41681946 (+) True LOC110522643
XM_036976367.1 mRNA downstream 517658 41884265 ~ 41934580 (+) True LOC110522644
TU398983 other upstream 152252 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 155203 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 375696 40990159 ~ 40990505 (+) True G352136
TU397710 other upstream 1229428 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 1229428 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 758069 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 953093 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 961273 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 1076148 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 1084425 42451032 ~ 42451409 (+) True G353339

Expression Profile