RNA id: TU399160


Basic Information

Item Value
RNA id TU399160
length 326
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G352481
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41378562 ~ 41378887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACgatcttcaatgccatacaactctccttccgtggcctccaattgctcttaaatacaagtaaaactaaatgcatgctcttcaaccgatcgctgcctgcacctgcccgcctgtccaacatcactactctggacgattctgacttagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaactctccttccagactcacatcaaacatctccaatccaaagttaaatctagaattggcttcctatttcgcaaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399157 lncRNA upstream 10838 41367455 ~ 41367724 (+) True G352478
TU399130 lncRNA upstream 46032 41332193 ~ 41332530 (+) True G352457
TU399049 lncRNA upstream 57224 41321053 ~ 41321338 (+) True G352389
TU399046 lncRNA upstream 59741 41318600 ~ 41318821 (+) True G352386
TU399045 lncRNA upstream 61491 41316635 ~ 41317071 (+) True G352385
TU399173 lncRNA downstream 43673 41422560 ~ 41422773 (+) True G352493
TU399148 lncRNA downstream 67480 41446367 ~ 41446616 (+) False G352472
TU399149 lncRNA downstream 67480 41446367 ~ 41446759 (+) False G352472
TU399150 lncRNA downstream 67480 41446367 ~ 41447543 (+) True G352472
TU399187 lncRNA downstream 69241 41448128 ~ 41448430 (+) True G352507
XM_036976342.1 mRNA upstream 292874 41071482 ~ 41085688 (+) False LOC110521114
XR_005051447.1 mRNA upstream 337523 41038237 ~ 41041039 (+) True LOC118964399
XM_036976336.1 mRNA upstream 433558 40918240 ~ 40945004 (+) False abcd4
XM_021601101.2 mRNA downstream 47993 41426880 ~ 41445268 (+) True LOC110522636
XM_036976355.1 mRNA downstream 269905 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 285715 41664602 ~ 41675680 (+) True LOC110522642
XM_021601116.2 mRNA downstream 297374 41676261 ~ 41681946 (+) True LOC110522643
XM_036976367.1 mRNA downstream 505378 41884265 ~ 41934580 (+) True LOC110522644
TU399156 other upstream 11955 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 164613 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 167564 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 388057 40990159 ~ 40990505 (+) True G352136
TU397708 other upstream 1241789 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 745789 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 940813 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 948993 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 1063868 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 1072145 42451032 ~ 42451409 (+) True G353339

Expression Profile