RNA id: TU399149


Basic Information

Item Value
RNA id TU399149
length 393
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G352472
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41446367 ~ 41447543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctgacacagCAGTGACAATTTTCTTAGTTTGTTTCTATGGCAACTGGAGTGGAAGGAGAAGGGACCCACGAGCTGCTCTCTTTGAAGACTTTCTCGACAGGtttgaataaataaaataaataagggACCCAAACACAATATGCTGGAAGACATTGATCTGAAAAACTATTACGTAACAGATTTTGtgagatatatattttttctttaaaATGGCTAATATTCTCTGGTGGTGTCATATGATTGATGTCCTGTTAATGTGTATCTGTCTGTTATATTACACCATGATCCTCATCATATTGTTTTGCTGGTGATTTTGAATACCTACTCTATGGTCATGCCAGGTTTGCTATTTATGAGTAGATGAAACATTAAGCAAAGGCATGATAGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399173 lncRNA upstream 23594 41422560 ~ 41422773 (+) True G352493
TU399160 lncRNA upstream 67480 41378562 ~ 41378887 (+) True G352481
TU399157 lncRNA upstream 78643 41367455 ~ 41367724 (+) True G352478
TU399130 lncRNA upstream 113837 41332193 ~ 41332530 (+) True G352457
TU399049 lncRNA upstream 125029 41321053 ~ 41321338 (+) True G352389
TU399187 lncRNA downstream 1369 41448128 ~ 41448430 (+) True G352507
TU399249 lncRNA downstream 14232 41460991 ~ 41461212 (+) True G352556
TU399251 lncRNA downstream 18170 41464929 ~ 41465167 (+) True G352558
TU399255 lncRNA downstream 28724 41475483 ~ 41475845 (+) True G352562
TU399256 lncRNA downstream 30077 41476836 ~ 41477260 (+) True G352563
XM_021601101.2 mRNA upstream 1099 41426880 ~ 41445268 (+) True LOC110522636
XM_036976342.1 mRNA upstream 360679 41071482 ~ 41085688 (+) False LOC110521114
XR_005051447.1 mRNA upstream 405328 41038237 ~ 41041039 (+) True LOC118964399
XM_036976337.1 mRNA upstream 501363 40924552 ~ 40945004 (+) True abcd4
XM_036976355.1 mRNA downstream 202033 41648792 ~ 41651426 (+) True LOC110522641
XM_021601114.2 mRNA downstream 217843 41664602 ~ 41675680 (+) True LOC110522642
XM_021601116.2 mRNA downstream 229502 41676261 ~ 41681946 (+) True LOC110522643
XM_036976367.1 mRNA downstream 437506 41884265 ~ 41934580 (+) True LOC110522644
XR_005051546.1 mRNA downstream 872642 42319401 ~ 42326981 (+) False LOC118964483
TU399156 other upstream 79760 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 232418 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 235369 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 455862 40990159 ~ 40990505 (+) True G352136
TU397708 other upstream 1309594 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 677917 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 872941 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 881121 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 995996 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 1004273 42451032 ~ 42451409 (+) True G353339

Expression Profile