RNA id: TCONS_00030741


Basic Information

Item Value
RNA id TCONS_00030741
length 528
lncRNA type retained_intron
GC content 0.36
exon number 2
gene id XLOC_015351
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 19236677 ~ 19274665 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCACCGAAAGGCCAAGGAGCAGCTGCCGCGAAACAGATGGGATTGTTGCTTGATTTCAAGCCAGATGATATGATGGATATGGATCAAGATCTGGATGATCCGTCTTTAGAAGCTGAATTTGCTGCCATTGTTGGGAAGAAACCAAATGTGCCTACCAGGGCGAAGAAGGCTGGCAAAGGTGGAAAATAgcattatttttgtctttattttctatttctgtTATGAATACAGACTGTATCTGTATAGCCTAACTTTAAAAGGTAGGATTTAAAATGCCTTCTAATGTATTCTATTATTGTGCAAATGTTGGGATTGTCCCAAGGTTTGTTTTACTTGGAGGAAGTTGTTCATTACATTGTCATTTATTTCAGTAGCAGTTGCTTTGTTGACAAAAAACCTCTCAGATGTACAGACATCATTAATAATGTTGTTATGGGAAGTAGTGTTGTCAGAAATATTGATATATCGATTAACATtgatattgaaatatttaaaataatatcaatCATGCTTTTGATTACTATCGA

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1426 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human CC2D1B (coiled-coil and C2 domain containing 1B).

Ensembl:

ensembl_id ENSDART00000159311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030733 lncRNA upstream 246662 18990177 ~ 18990701 (+) True XLOC_015348
TCONS_00030732 lncRNA upstream 246844 18988421 ~ 18990519 (+) False XLOC_015348
TCONS_00030729 lncRNA upstream 831246 18405569 ~ 18406117 (+) True XLOC_015346
TCONS_00033512 lncRNA upstream 901652 18332793 ~ 18335711 (+) True XLOC_015345
TCONS_00033252 lncRNA upstream 902488 18332763 ~ 18334875 (+) False XLOC_015345
TCONS_00030748 lncRNA downstream 315730 19559074 ~ 19562491 (+) True XLOC_015355
TCONS_00033513 lncRNA downstream 346700 19590044 ~ 19595194 (+) True XLOC_015358
TCONS_00033253 lncRNA downstream 371609 19614953 ~ 19616789 (+) True XLOC_015359
TCONS_00033514 lncRNA downstream 397608 19640952 ~ 19649341 (+) False XLOC_015362
TCONS_00033515 lncRNA downstream 416366 19659710 ~ 19679329 (+) True XLOC_015363
TCONS_00030735 mRNA upstream 22251 19163965 ~ 19215112 (+) False XLOC_015350
TCONS_00030736 mRNA upstream 22726 19195841 ~ 19214637 (+) False XLOC_015350
TCONS_00030737 mRNA upstream 27672 19195971 ~ 19209691 (+) True XLOC_015350
TCONS_00030734 mRNA upstream 92896 19104231 ~ 19144467 (+) True XLOC_015349
TCONS_00030731 mRNA upstream 245013 18988407 ~ 18992350 (+) False XLOC_015348
TCONS_00030743 mRNA downstream 261919 19505263 ~ 19508136 (+) False XLOC_015352
TCONS_00030742 mRNA downstream 261919 19505263 ~ 19508136 (+) False XLOC_015352
TCONS_00030746 mRNA downstream 278738 19522082 ~ 19524247 (+) True XLOC_015354
TCONS_00030747 mRNA downstream 315703 19559047 ~ 19563419 (+) False XLOC_015355
TCONS_00030750 mRNA downstream 334735 19578079 ~ 19580088 (+) False XLOC_015357
TCONS_00030730 other upstream 734939 18502308 ~ 18502424 (+) True XLOC_015347
TCONS_00030726 other upstream 1579287 17657958 ~ 17658076 (+) True XLOC_015342
TCONS_00030715 other upstream 2407599 16829689 ~ 16829764 (+) True XLOC_015330
TCONS_00030714 other upstream 2412544 16824759 ~ 16824819 (+) True XLOC_015329
TCONS_00030677 other upstream 3075794 16160943 ~ 16161569 (+) False XLOC_015314
TCONS_00030744 other downstream 261946 19505290 ~ 19507193 (+) True XLOC_015352
TCONS_00030745 other downstream 275741 19519085 ~ 19519182 (+) True XLOC_015353
TCONS_00030749 other downstream 331715 19575059 ~ 19575156 (+) True XLOC_015356
TCONS_00030752 other downstream 385353 19628697 ~ 19628794 (+) True XLOC_015360
TCONS_00030754 other downstream 397608 19640952 ~ 19649341 (+) True XLOC_015362

Expression Profile

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