RNA id: TU399660


Basic Information

Item Value
RNA id TU399660
length 809
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G352898
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41785823 ~ 41786631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACCCATTGAACAAGAAAATTACATTTCATTAGAGAAAAAATGTAAGATTTGTGGATTTTGTAGAGCCAAGCTCTTTATGTACAGCATATTGCACTAGACAAAACAAATATCTCCCtcgttccccctctctttccccttgtTTCACACTGTTTGAAAACCATGCAGGGCTCTCAGAAGCGTCTCATAACGccgcctgcatcccaaatggctccctatgttatgtactacttttgaccagggcccatagagctctggtcaaaagtagtgtactacataaggtatagggtgccattttggacagacTGTTCTGCTACATTTAGACTGGGCCTTCCTTCATAAAACACACCGCCCCGACCGATGTGGAATCCTTGAGACAGTTCTGAGAGCTCTAATGATGTGTTCTAGAATGATGTGATATTTGAAGATGGTTCTGAGAGCTCTACTGATGTGTTCTAGAATGATGTGATATGAAGGCAATGCTAAAGAGAGTCCTAGTTCAACAGAGCAGGAGTTAGATGGAAGTTCACAATGTTTCAGTTCATATAGTATTTAAAAAAAGAGATTGTGTTTTTTCCTCTCAATTCATTTACATTCAAACACAGATTTCAGGAATGCTGGGACATGCATTTTTACTCCATATACAGAATTATCAAATATCAAAAACAGCCCTTGAACTGAGAACGACACAGCGGACTTAAATTGGTAAAAACCAAAAAGCATGTCACAACACTTAAAAAgcgatctttaaaaaaaaaaaaaaaatcatgttttcGGACTTCATTgttacatttgttttgtttttttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399646 lncRNA upstream 5960 41779656 ~ 41779863 (+) True G352889
TU399399 lncRNA upstream 79998 41693398 ~ 41705825 (+) True G352678
TU399394 lncRNA upstream 82440 41702554 ~ 41703383 (+) True G352677
TU399396 lncRNA upstream 92094 41693398 ~ 41693729 (+) False G352678
TU399400 lncRNA upstream 94173 41690882 ~ 41691650 (+) True G352679
TU399655 lncRNA downstream 130 41786761 ~ 41788891 (+) True G352896
TU399688 lncRNA downstream 24267 41810898 ~ 41811111 (+) True G352920
TU399698 lncRNA downstream 35538 41822169 ~ 41822957 (+) True G352930
TU399702 lncRNA downstream 37335 41823966 ~ 41824172 (+) True G352932
TU399709 lncRNA downstream 44132 41830763 ~ 41831265 (+) True G352939
XM_021601116.2 mRNA upstream 103877 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 110143 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 134397 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 340555 41426880 ~ 41445268 (+) True LOC110522636
XM_036976342.1 mRNA upstream 700135 41071482 ~ 41085688 (+) False LOC110521114
XM_036976367.1 mRNA downstream 97634 41884265 ~ 41934580 (+) True LOC110522644
XR_005051546.1 mRNA downstream 532770 42319401 ~ 42326981 (+) False LOC118964483
XR_005051547.1 mRNA downstream 532770 42319401 ~ 42326981 (+) False LOC118964483
XR_005051548.1 mRNA downstream 532770 42319401 ~ 42326981 (+) False LOC118964483
XR_005051549.1 mRNA downstream 532770 42319401 ~ 42326981 (+) False LOC118964483
TU399156 other upstream 419216 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 571874 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 574825 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 795318 40990159 ~ 40990505 (+) True G352136
TU397708 other upstream 1649050 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 338045 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 533069 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 541249 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 656124 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 664401 42451032 ~ 42451409 (+) True G353339

Expression Profile