RNA id: TU399758


Basic Information

Item Value
RNA id TU399758
length 207
lncRNA type intronic
GC content 0.43
exon number 1
gene id G352985
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41949432 ~ 41949638 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGATGGTGAAACTGAACGTTTTTATTGATGTAAAATGATCACGGTATTGGGATAAGGGAGAGAAGAAAAAACACATCTGTTTTGCAAGCGGTACGTTCACGATAGGCTCTTGTCTATTCAGCTGTGACCGTTTTGTCGTTGGACACGCTAAATGTACGATAGACAGTTTCGTTTGGAGTTGAGTCGGAtctccccatctctgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399755 lncRNA upstream 4708 41944522 ~ 41944724 (+) True G352982
TU399754 lncRNA upstream 6632 41942545 ~ 41942800 (+) True G352981
TU399749 lncRNA upstream 28584 41920316 ~ 41920848 (+) True G352976
TU399747 lncRNA upstream 30672 41917045 ~ 41918760 (+) True G352974
TU399745 lncRNA upstream 42245 41905742 ~ 41907187 (+) True G352972
TU399759 lncRNA downstream 5120 41954758 ~ 41955098 (+) True G352986
TU399761 lncRNA downstream 17004 41966642 ~ 41966841 (+) True G352988
TU399770 lncRNA downstream 21755 41971393 ~ 41972355 (+) False G352991
TU399771 lncRNA downstream 21755 41971393 ~ 41972355 (+) False G352991
TU399786 lncRNA downstream 63479 42013117 ~ 42013838 (+) True G353003
XM_036976367.1 mRNA upstream 14852 41884265 ~ 41934580 (+) True LOC110522644
XM_021601116.2 mRNA upstream 267486 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 273752 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 298006 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 504164 41426880 ~ 41445268 (+) True LOC110522636
XR_005051546.1 mRNA downstream 369763 42319401 ~ 42326981 (+) False LOC118964483
XR_005051547.1 mRNA downstream 369763 42319401 ~ 42326981 (+) False LOC118964483
XR_005051548.1 mRNA downstream 369763 42319401 ~ 42326981 (+) False LOC118964483
XR_005051549.1 mRNA downstream 369763 42319401 ~ 42326981 (+) False LOC118964483
XR_005051554.1 mRNA downstream 369763 42319401 ~ 42326981 (+) False LOC118964483
TU399156 other upstream 582825 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 735483 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 738434 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 958927 40990159 ~ 40990505 (+) True G352136
TU397708 other upstream 1812659 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 175038 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 370062 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 378242 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 493117 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 501394 42451032 ~ 42451409 (+) True G353339

Expression Profile