RNA id: TU399771


Basic Information

Item Value
RNA id TU399771
length 668
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G352991
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 41971393 ~ 42031934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTGCTATGGAGAGTCCGAACTTGACGATGACCACGTCTGAGATGTTGGGTACGGGTCTGGACCACTTGTTGTACCCGATGAAGAGCTTTTTGAAAAGCTCGTCCTCCGCATGTGAATGGGCTTTCTCAAGACAGAAAACTACAGGGGCCACAAGAGACACGGCGCTCACAGTTTTATAACAAACCTCTTGTTGTATCcaagacatcaaatcaaattgtatttgttacatgtgccaaatacaacaggtgtagtagaccttacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttaaagtgaaatgctgaatactacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagacctcacagtgaaatgctgaatactacaggtgtagaccttacagtgaaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399761 lncRNA upstream 4552 41966642 ~ 41966841 (+) True G352988
TU399759 lncRNA upstream 16295 41954758 ~ 41955098 (+) True G352986
TU399758 lncRNA upstream 21755 41949432 ~ 41949638 (+) True G352985
TU399755 lncRNA upstream 26669 41944522 ~ 41944724 (+) True G352982
TU399754 lncRNA upstream 28593 41942545 ~ 41942800 (+) True G352981
TU399786 lncRNA downstream 40762 42013117 ~ 42013838 (+) True G353003
TU399768 lncRNA downstream 58986 42031341 ~ 42031934 (+) False G352991
TU399769 lncRNA downstream 58986 42031341 ~ 42031934 (+) True G352991
TU399800 lncRNA downstream 84587 42056942 ~ 42057601 (+) True G353015
TU399916 lncRNA downstream 145742 42118097 ~ 42119525 (+) True G353122
XM_036976367.1 mRNA upstream 36813 41884265 ~ 41934580 (+) True LOC110522644
XM_021601116.2 mRNA upstream 289447 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 295713 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 319967 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 526125 41426880 ~ 41445268 (+) True LOC110522636
XR_005051546.1 mRNA downstream 347046 42319401 ~ 42326981 (+) False LOC118964483
XR_005051547.1 mRNA downstream 347046 42319401 ~ 42326981 (+) False LOC118964483
XR_005051548.1 mRNA downstream 347046 42319401 ~ 42326981 (+) False LOC118964483
XR_005051549.1 mRNA downstream 347046 42319401 ~ 42326981 (+) False LOC118964483
XR_005051554.1 mRNA downstream 347046 42319401 ~ 42326981 (+) False LOC118964483
TU399156 other upstream 604786 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 757444 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 760395 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 980888 40990159 ~ 40990505 (+) True G352136
TU397708 other upstream 1834620 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 152321 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 347345 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 355525 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 470400 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 478677 42451032 ~ 42451409 (+) True G353339