RNA id: TU399917


Basic Information

Item Value
RNA id TU399917
length 477
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G353123
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42118393 ~ 42119155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAGATATTCTGCTCCGATATTCTGTTCAGAGATTCTGTTCAGAGATTCTGTTTAGATATTCTGTTCAGAGATTCTGTTCAGATATTCTGTTTAGATATTCTGTTTAGAGATTCTGTTCAGAGATTCTGTTCAGAGATTCTGTTCAGAGATTATGTTTAGATATTCTGTTTAGAGATTCTGTTCAGAGATTCTGTTCAGATATTCTGTTCAGAGATTCTGTTCAGATATTCTGCTCCGATATTCTGTTCAGAGATTCTGTTCAGATATTCTGCTCCGATATTCTGTTCAGAGATTCTGTTCAGATATTCTGTTCAGATATTCTGTTCAGAGATTCTGCTCCGATATTCTGTTCAGATATTCTGCTCCGATATTCTGTTCAGAGATTCTGTTCAGATATTCTGTTCAGATATTCTGTTCAGATATTCTGTTCAGATATTCTGTTCAGAGATTCTGTTCAGATATTCTGTTCAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399800 lncRNA upstream 60792 42056942 ~ 42057601 (+) True G353015
TU399768 lncRNA upstream 86459 42031341 ~ 42031934 (+) False G352991
TU399769 lncRNA upstream 86459 42031341 ~ 42031934 (+) True G352991
TU399786 lncRNA upstream 104555 42013117 ~ 42013838 (+) True G353003
TU399771 lncRNA upstream 146038 41971393 ~ 41972355 (+) False G352991
TU399925 lncRNA downstream 9266 42128421 ~ 42129610 (+) True G353127
TU399937 lncRNA downstream 26091 42145246 ~ 42173670 (+) True G353138
TU400053 lncRNA downstream 96436 42215591 ~ 42216426 (+) True G353244
TU400056 lncRNA downstream 128376 42247531 ~ 42247820 (+) True G353246
TU400057 lncRNA downstream 129419 42248574 ~ 42249678 (+) True G353247
XM_036976367.1 mRNA upstream 183813 41884265 ~ 41934580 (+) True LOC110522644
XM_021601116.2 mRNA upstream 436447 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 442713 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 466967 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 673125 41426880 ~ 41445268 (+) True LOC110522636
XR_005051546.1 mRNA downstream 200246 42319401 ~ 42326981 (+) False LOC118964483
XR_005051547.1 mRNA downstream 200246 42319401 ~ 42326981 (+) False LOC118964483
XR_005051548.1 mRNA downstream 200246 42319401 ~ 42326981 (+) False LOC118964483
XR_005051549.1 mRNA downstream 200246 42319401 ~ 42326981 (+) False LOC118964483
XR_005051554.1 mRNA downstream 200246 42319401 ~ 42326981 (+) False LOC118964483
TU399156 other upstream 751786 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 904444 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 907395 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 1127888 40990159 ~ 40990505 (+) True G352136
TU397708 other upstream 1981620 40134966 ~ 40136773 (+) True G351441
TU399921 other downstream 5521 42124676 ~ 42125759 (+) True G353125
TU400095 other downstream 200545 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 208725 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 323600 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 331877 42451032 ~ 42451409 (+) True G353339

Expression Profile