RNA id: TU399937


Basic Information

Item Value
RNA id TU399937
length 383
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G353138
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42145246 ~ 42173670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgcctcaggactacctgacatgatgactccttcctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgccttattattattggaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttaaaatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggtttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399925 lncRNA upstream 15636 42128421 ~ 42129610 (+) True G353127
TU399916 lncRNA upstream 25721 42118097 ~ 42119525 (+) True G353122
TU399917 lncRNA upstream 26091 42118393 ~ 42119155 (+) True G353123
TU399800 lncRNA upstream 87645 42056942 ~ 42057601 (+) True G353015
TU399768 lncRNA upstream 113312 42031341 ~ 42031934 (+) False G352991
TU400053 lncRNA downstream 41921 42215591 ~ 42216426 (+) True G353244
TU400056 lncRNA downstream 73861 42247531 ~ 42247820 (+) True G353246
TU400057 lncRNA downstream 74904 42248574 ~ 42249678 (+) True G353247
TU400066 lncRNA downstream 111183 42284853 ~ 42285531 (+) True G353255
TU400068 lncRNA downstream 115105 42288775 ~ 42289729 (+) True G353257
XM_036976367.1 mRNA upstream 210666 41884265 ~ 41934580 (+) True LOC110522644
XM_021601116.2 mRNA upstream 463300 41676261 ~ 41681946 (+) True LOC110522643
XM_021601114.2 mRNA upstream 469566 41664602 ~ 41675680 (+) True LOC110522642
XM_036976355.1 mRNA upstream 493820 41648792 ~ 41651426 (+) True LOC110522641
XM_021601101.2 mRNA upstream 699978 41426880 ~ 41445268 (+) True LOC110522636
XR_005051546.1 mRNA downstream 145731 42319401 ~ 42326981 (+) False LOC118964483
XR_005051547.1 mRNA downstream 145731 42319401 ~ 42326981 (+) False LOC118964483
XR_005051548.1 mRNA downstream 145731 42319401 ~ 42326981 (+) False LOC118964483
XR_005051549.1 mRNA downstream 145731 42319401 ~ 42326981 (+) False LOC118964483
XR_005051554.1 mRNA downstream 145731 42319401 ~ 42326981 (+) False LOC118964483
TU399921 other upstream 19487 42124676 ~ 42125759 (+) True G353125
TU399156 other upstream 778639 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 931297 41211113 ~ 41213949 (+) True G352341
TU398979 other upstream 934248 41210247 ~ 41210998 (+) True G352340
TU398718 other upstream 1154741 40990159 ~ 40990505 (+) True G352136
TU400095 other downstream 146030 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other downstream 154210 42327880 ~ 42328637 (+) True LOC118964483
TU400176 other downstream 269085 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 277362 42451032 ~ 42451409 (+) True G353339
TU400784 other downstream 737216 42910886 ~ 42912177 (+) False G353820

Expression Profile