RNA id: TU400177


Basic Information

Item Value
RNA id TU400177
length 630
lncRNA type intronic
GC content 0.41
exon number 3
gene id G353329
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42422755 ~ 42425412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctcctagaactatatccctcttcttcttcttctaccaagactgtctcctagaactatatccctcttcttcttcttcttcttcttctaccaagactgtctcctagaactatatccctcttcttctaccaagactgtctcctagaactatatccctcttcttctaccaagactgtctcctagaactatatccctcttcttctaccaagaatgtctcctagaactatatccctcttcttctaccaagactgtctcctataactatatccctcttcttcttcttctatcaAGGCTGTCTCCTAGAACTATATCCCtcttcttcttctaccaaggctgtctcctagaactatatccctcttcttcttcttctaccaagactgtctcctagaactatatccctcttcttcttctaccaagactgtctcctagaactatatccctcttcttcttctaccaagactgtctcctagaactatatccctcttcttctaccaagactgtctcctagaactatatccctcttcttctaccaagaatgtctcctagaactatatccctcttcttctaccaagactgtctcctagaactatatccctcttcttcttcttctatcaAGGCTGTCTCCTAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400159 lncRNA upstream 17794 42403323 ~ 42404961 (+) True G353318
TU400156 lncRNA upstream 33293 42387966 ~ 42389462 (+) True G353315
TU400151 lncRNA upstream 41909 42380166 ~ 42380846 (+) True G353312
TU400132 lncRNA upstream 52105 42367755 ~ 42370650 (+) True G353293
TU400115 lncRNA upstream 87389 42333636 ~ 42335366 (+) True G353284
TU400182 lncRNA downstream 18362 42443774 ~ 42444339 (+) True G353334
TU400184 lncRNA downstream 20551 42445963 ~ 42446188 (+) True G353336
TU400185 lncRNA downstream 22450 42447862 ~ 42448095 (+) True G353337
TU400188 lncRNA downstream 26403 42451815 ~ 42452065 (+) True G353340
TU400191 lncRNA downstream 29529 42454941 ~ 42455543 (+) True G353343
XM_036976381.1 mRNA upstream 58401 42329742 ~ 42364354 (+) False eif2b4
XM_036976380.1 mRNA upstream 58401 42329936 ~ 42364354 (+) True eif2b4
XR_005051551.1 mRNA upstream 95774 42319932 ~ 42326981 (+) False LOC118964483
XM_021601134.2 mRNA downstream 34946 42460358 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601127.2 mRNA downstream 34949 42460361 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601131.2 mRNA downstream 34949 42460361 ~ 42514461 (+) False si:ch211-278j3.3
XM_021601133.2 mRNA downstream 34949 42460361 ~ 42514461 (+) False si:ch211-278j3.3
XM_036976389.1 mRNA downstream 96374 42521786 ~ 42630516 (+) True si:dkey-71h2.2
TU400095 other upstream 94118 42319700 ~ 42328637 (+) False LOC118964483
TU400099 other upstream 94118 42327880 ~ 42328637 (+) True LOC118964483
TU399921 other upstream 296996 42124676 ~ 42125759 (+) True G353125
TU399156 other upstream 1056148 41366201 ~ 41366607 (+) True G352477
TU398983 other upstream 1208806 41211113 ~ 41213949 (+) True G352341
TU400176 other downstream 17343 42442755 ~ 42443381 (+) True G353328
TU400187 other downstream 25620 42451032 ~ 42451409 (+) True G353339
TU400784 other downstream 485474 42910886 ~ 42912177 (+) False G353820
TU400954 other downstream 828491 43253903 ~ 43279017 (+) True sh3bgrl2
TU401635 other downstream 1185550 43610962 ~ 43611562 (+) True G354462

Expression Profile