RNA id: TU400813


Basic Information

Item Value
RNA id TU400813
length 442
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G353833
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 42934017 ~ 42934458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactacctctgatctggaggacacactgaacagagaacatccctgatcatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatccctactgcctctgatctggcagactcactaaacagagaacatccctggtcatccctactgcctctgatatggaggactcactaaacagagaacatccctggtcctccctactgcctctgatctggtggactcactaaacagagaacatccctggtcctccctactgcctctgatctggcggactcactaaacagagaacatccctggtcatccctactgcctctgatctggagaactcactaaacagagaacatccctggtcctccctactgcctctgatctggtggactcactaaacagagaacatccctggtcctccctactgcctctgatctggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400812 lncRNA upstream 1890 42931803 ~ 42932127 (+) True G353832
TU400811 lncRNA upstream 1933 42931775 ~ 42932084 (+) False G353832
TU400807 lncRNA upstream 1933 42931803 ~ 42932084 (+) False G353832
TU400805 lncRNA upstream 2525 42931068 ~ 42931492 (+) True G353831
TU400804 lncRNA upstream 2706 42930878 ~ 42931311 (+) False G353831
TU400814 lncRNA downstream 338 42934796 ~ 42935505 (+) True G353834
TU400816 lncRNA downstream 3139 42937597 ~ 42939857 (+) True G353835
TU400839 lncRNA downstream 57676 42992134 ~ 42992656 (+) True G353856
TU400845 lncRNA downstream 76869 43011327 ~ 43011792 (+) True G353862
TU400856 lncRNA downstream 90870 43025328 ~ 43025859 (+) True G353864
XM_036976389.1 mRNA upstream 303501 42521786 ~ 42630516 (+) True si:dkey-71h2.2
XM_021601134.2 mRNA upstream 419556 42460358 ~ 42514461 (+) False si:ch211-278j3.3
XM_036976397.1 mRNA downstream 319434 43253892 ~ 43278315 (+) False sh3bgrl2
XM_036976398.1 mRNA downstream 319434 43253892 ~ 43278315 (+) False sh3bgrl2
XM_036976399.1 mRNA downstream 352194 43286652 ~ 43291268 (+) True rps12
XR_005051570.1 mRNA downstream 352724 43287182 ~ 43287259 (+) True LOC118964509
XM_036976408.1 mRNA downstream 769561 43704019 ~ 43722541 (+) False tbpl1
TU400784 other upstream 21840 42910886 ~ 42912177 (+) False G353820
TU400187 other upstream 482608 42451032 ~ 42451409 (+) True G353339
TU400176 other upstream 490636 42442755 ~ 42443381 (+) True G353328
TU400095 other upstream 605380 42319700 ~ 42328637 (+) False LOC118964483
TU400954 other downstream 319445 43253903 ~ 43279017 (+) True sh3bgrl2
TU401635 other downstream 676504 43610962 ~ 43611562 (+) True G354462
TU401825 other downstream 1055665 43990123 ~ 43990639 (+) True G354630
TU401884 other downstream 1174621 44109079 ~ 44110024 (+) True myb
TU402072 other downstream 1525235 44459693 ~ 44461991 (+) True G354819

Expression Profile