RNA id: TU401868


Basic Information

Item Value
RNA id TU401868
length 352
lncRNA type read_through
GC content 0.45
exon number 2
gene id G354658
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44043693 ~ 44060346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATTCAGATGTTCGTCTTTATTTCATTAGTGCTGTCACGTCATACTTAAGATCATTCTCTTAACTTAAAATACTTTGTATTTAGCAAACCATTAAAgcgatttgtgtgtgtgtgtgtgtgtgtatgctcatACGTGGGAAAAACTCCAGGTGTCCTCTAAAACTCAAATATCTCCCccctgcacgcacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacacacacactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401860 lncRNA upstream 2138 44041769 ~ 44042054 (+) True G354656
TU401843 lncRNA upstream 2567 44006897 ~ 44041625 (+) False G354643
TU401844 lncRNA upstream 2567 44006897 ~ 44041625 (+) False G354643
TU401841 lncRNA upstream 2567 44040655 ~ 44041625 (+) True G354643
TU401838 lncRNA upstream 38677 44005099 ~ 44005515 (+) True G354641
TU401894 lncRNA downstream 43203 44099357 ~ 44099644 (+) True G354680
TU401906 lncRNA downstream 69678 44125832 ~ 44128163 (+) True G354691
TU401930 lncRNA downstream 117364 44173518 ~ 44175912 (+) True G354711
TU401946 lncRNA downstream 132877 44189031 ~ 44189483 (+) True G354722
TU401935 lncRNA downstream 134151 44190305 ~ 44191015 (+) True G354716
XM_036976410.1 mRNA upstream 275209 43740263 ~ 43768983 (+) False slc2a12
XM_036976411.1 mRNA upstream 275209 43740263 ~ 43768983 (+) True slc2a12
XM_036976408.1 mRNA upstream 321651 43704019 ~ 43722541 (+) False tbpl1
XM_036976409.1 mRNA upstream 321651 43704489 ~ 43722541 (+) True tbpl1
XR_005051570.1 mRNA upstream 756933 43287182 ~ 43287259 (+) True LOC118964509
XM_036976418.1 mRNA downstream 28462 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA downstream 28463 44084617 ~ 44110268 (+) False myb
XM_036976422.1 mRNA downstream 253319 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976424.1 mRNA downstream 345162 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA downstream 345389 44401543 ~ 44700404 (+) True nbas
TU401825 other upstream 53553 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 432630 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 765175 43253903 ~ 43279017 (+) True sh3bgrl2
TU400784 other upstream 1132015 42910886 ~ 42912177 (+) False G353820
TU400187 other upstream 1592783 42451032 ~ 42451409 (+) True G353339
TU401884 other downstream 52925 44109079 ~ 44110024 (+) True myb
TU402072 other downstream 403539 44459693 ~ 44461991 (+) True G354819
TU402960 other downstream 918882 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 1007459 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1564112 45620266 ~ 45624004 (+) False G355753

Expression Profile