RNA id: TU401930


Basic Information

Item Value
RNA id TU401930
length 233
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G354711
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44173518 ~ 44175912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgtactcaatacacagaactgaactgtactcaatacacagaactgaactgtactgtactcaatacatagatctgtactgtagtgtactcaatacacagaactgaactgtactgtactcaatacatagatctgtactgtACTGTACACAATACATagatctgtactgtactgtacacaatACATAGATATGTACTGTACTCAATACATAATGATTCATCTGAAACTCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401906 lncRNA upstream 45355 44125832 ~ 44128163 (+) True G354691
TU401894 lncRNA upstream 73874 44099357 ~ 44099644 (+) True G354680
TU401868 lncRNA upstream 117364 44044192 ~ 44056154 (+) True G354658
TU401862 lncRNA upstream 125911 44045479 ~ 44047607 (+) False G354657
TU401863 lncRNA upstream 125911 44045479 ~ 44047607 (+) True G354657
TU401946 lncRNA downstream 13119 44189031 ~ 44189483 (+) True G354722
TU401935 lncRNA downstream 14393 44190305 ~ 44191015 (+) True G354716
TU401950 lncRNA downstream 27130 44203042 ~ 44203609 (+) True G354725
TU401994 lncRNA downstream 75451 44251363 ~ 44266753 (+) True G354750
TU401996 lncRNA downstream 92376 44268288 ~ 44269650 (+) True G354752
XM_036976418.1 mRNA upstream 63250 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 63250 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 404535 43740263 ~ 43768983 (+) False slc2a12
XM_036976411.1 mRNA upstream 404535 43740263 ~ 43768983 (+) True slc2a12
XM_036976409.1 mRNA upstream 450977 43704489 ~ 43722541 (+) True tbpl1
XM_036976422.1 mRNA downstream 133561 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976424.1 mRNA downstream 225404 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA downstream 225631 44401543 ~ 44700404 (+) True nbas
XM_036976429.1 mRNA downstream 759762 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1557730 45733642 ~ 45752953 (+) False LOC110510408
TU401884 other upstream 63494 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 182879 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 561956 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 894501 43253903 ~ 43279017 (+) True sh3bgrl2
TU400784 other upstream 1261341 42910886 ~ 42912177 (+) False G353820
TU402072 other downstream 283781 44459693 ~ 44461991 (+) True G354819
TU402960 other downstream 799124 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 887701 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1444354 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 1513523 45689435 ~ 45698847 (+) True G355763

Expression Profile