RNA id: TU401935


Basic Information

Item Value
RNA id TU401935
length 525
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G354716
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44190305 ~ 44191015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGCCtctccatttttatttatttattgaaattGCACAAAGATATTGCAGTGCATGTTGGGATATCACTTTGCTCTTAATCCTAACTGGCTTTGTCGAAGTGGCGATCTGAGGGTCTAATGAACCCCTACACCCTCGATAATTTTCACTCCATGAGCTTCGGAACACTTGTGCAAATGTCGGAGGCGAGCGTGAACGGCGAGGGTCGAGTGTGAACGGCGAGGGGCGAGCGTGAACGGCGAGGGGCGAGCGTGAACGCGGAAATGGAAGGCTGAGGGAAAGGAAGTGATTTGTCATTTAGccactccctcgctctcccctTCTACCTCAaacagggatggagggaatagacaGACAACTGAAGGGAGGAGTGAGACTGAAAGAAGAGACATATAACCCGATATGAGAACGCTAAAagagtgcaaaactgtcatcaaggcaaaggctggctactttgaagaatctaaactataaaatatattttgatttgttgaacacattttcttggttactacatgattcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401946 lncRNA upstream 822 44189031 ~ 44189483 (+) True G354722
TU401930 lncRNA upstream 14393 44173518 ~ 44175912 (+) True G354711
TU401906 lncRNA upstream 62142 44125832 ~ 44128163 (+) True G354691
TU401894 lncRNA upstream 90661 44099357 ~ 44099644 (+) True G354680
TU401862 lncRNA upstream 142698 44045479 ~ 44047607 (+) False G354657
TU401950 lncRNA downstream 12027 44203042 ~ 44203609 (+) True G354725
TU401994 lncRNA downstream 60348 44251363 ~ 44266753 (+) True G354750
TU401996 lncRNA downstream 77273 44268288 ~ 44269650 (+) True G354752
TU402001 lncRNA downstream 84632 44275647 ~ 44276272 (+) True G354757
TU401956 lncRNA downstream 134890 44325905 ~ 44344882 (+) False G354728
XM_036976418.1 mRNA upstream 80037 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 80037 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 421322 43740263 ~ 43768983 (+) False slc2a12
XM_036976411.1 mRNA upstream 421322 43740263 ~ 43768983 (+) True slc2a12
XM_036976409.1 mRNA upstream 467764 43704489 ~ 43722541 (+) True tbpl1
XM_036976422.1 mRNA downstream 118458 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976424.1 mRNA downstream 210301 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA downstream 210528 44401543 ~ 44700404 (+) True nbas
XM_036976429.1 mRNA downstream 744659 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1542627 45733642 ~ 45752953 (+) False LOC110510408
TU401884 other upstream 80281 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 199666 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 578743 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 911288 43253903 ~ 43279017 (+) True sh3bgrl2
TU400784 other upstream 1278128 42910886 ~ 42912177 (+) False G353820
TU402072 other downstream 268678 44459693 ~ 44461991 (+) True G354819
TU402960 other downstream 784021 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 872598 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1429251 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 1498420 45689435 ~ 45698847 (+) True G355763

Expression Profile