RNA id: TU402001


Basic Information

Item Value
RNA id TU402001
length 270
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G354757
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44275647 ~ 44276272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGTGgtaataacagggggttagtggtTGGACTGTAGTAATAACAGGAGGTTAGTGGTTAGACTGTGgtaataacaggggGTTAGTGGTTAAACTGGTAATAACAAGGGGTTAGTGGTTGgactcatgatttggttgggtctaattgtgtttctgtcctggggctctgtagggtgtgtttgtgtttgtgaacagagccccaggaccagcttgcttaggggactcttctccaggttaacctctctgtaggtgatggctttgttatggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401996 lncRNA upstream 5997 44268288 ~ 44269650 (+) True G354752
TU401994 lncRNA upstream 8894 44251363 ~ 44266753 (+) True G354750
TU401950 lncRNA upstream 72038 44203042 ~ 44203609 (+) True G354725
TU401935 lncRNA upstream 84632 44190305 ~ 44191015 (+) True G354716
TU401946 lncRNA upstream 86164 44189031 ~ 44189483 (+) True G354722
TU401956 lncRNA downstream 49633 44325905 ~ 44344882 (+) False G354728
TU401958 lncRNA downstream 49633 44325905 ~ 44344882 (+) False G354728
TU401963 lncRNA downstream 49633 44325905 ~ 44344882 (+) False G354728
TU402019 lncRNA downstream 54233 44330505 ~ 44330963 (+) True G354774
TU401961 lncRNA downstream 63008 44339280 ~ 44344882 (+) False G354728
XM_036976418.1 mRNA upstream 165379 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 165379 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 506664 43740263 ~ 43768983 (+) False slc2a12
XM_036976411.1 mRNA upstream 506664 43740263 ~ 43768983 (+) True slc2a12
XM_036976409.1 mRNA upstream 553106 43704489 ~ 43722541 (+) True tbpl1
XM_036976422.1 mRNA downstream 33201 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976424.1 mRNA downstream 125044 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA downstream 125271 44401543 ~ 44700404 (+) True nbas
XM_036976429.1 mRNA downstream 659402 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1457370 45733642 ~ 45752953 (+) False LOC110510408
TU401884 other upstream 165623 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 285008 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 664085 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 996630 43253903 ~ 43279017 (+) True sh3bgrl2
TU400784 other upstream 1363470 42910886 ~ 42912177 (+) False G353820
TU402072 other downstream 183421 44459693 ~ 44461991 (+) True G354819
TU402960 other downstream 698764 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 787341 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1343994 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 1413163 45689435 ~ 45698847 (+) True G355763

Expression Profile