RNA id: TU402060


Basic Information

Item Value
RNA id TU402060
length 297
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G354810
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44438133 ~ 44467906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctgtctctctctctgtctctctctctgtctctctctctctgtgtgtctctgtctctctctctctgtccctctctctctgtctctctctctctgtctctctctctctgtctctctctgtctctctctctctctctgtctctctctgtctcctctgtctctctctctgtgtgagactacttttggttactacatgatcccataagtgttatttcatagttttgatgtcttcactattattctacaatgtaaaaataaaatccCTTGAGTAGATGTGTCCTTTAGACCGGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401956 lncRNA upstream 93251 44325905 ~ 44344882 (+) False G354728
TU401958 lncRNA upstream 93251 44325905 ~ 44344882 (+) False G354728
TU401963 lncRNA upstream 93251 44325905 ~ 44344882 (+) False G354728
TU401961 lncRNA upstream 93251 44339280 ~ 44344882 (+) False G354728
TU401962 lncRNA upstream 93251 44339280 ~ 44344882 (+) False G354728
TU402077 lncRNA downstream 2023 44469929 ~ 44470340 (+) True G354824
TU402084 lncRNA downstream 29621 44497527 ~ 44498630 (+) True G354831
TU402086 lncRNA downstream 35162 44503068 ~ 44504165 (+) True G354833
TU402089 lncRNA downstream 50103 44518009 ~ 44518425 (+) True G354835
TU402091 lncRNA downstream 55637 44523543 ~ 44524374 (+) True G354837
XM_036976422.1 mRNA upstream 101155 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 327865 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 327865 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 669150 43740263 ~ 43768983 (+) False slc2a12
XM_036976429.1 mRNA downstream 467768 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1265736 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 1265736 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 1265736 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 1265736 45733642 ~ 45752953 (+) False LOC110510408
TU401884 other upstream 328109 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 447494 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 826571 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1159116 43253903 ~ 43279017 (+) True sh3bgrl2
TU400784 other upstream 1525956 42910886 ~ 42912177 (+) False G353820
TU402960 other downstream 507130 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 595707 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1152360 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 1221529 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 1265763 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile