RNA id: TU402101


Basic Information

Item Value
RNA id TU402101
length 327
lncRNA type intronic
GC content 0.43
exon number 2
gene id G354844
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44545929 ~ 44546302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caCAGACAACTTGTCTGAGGAGATTGTGTTGCAGTGTTTTCTTAGGCTTCATAACAAATaacactatattccctatatagtgcactactttagaccagagccctatagaaacctattccctatatagtgcactactttagaccagagccctatgacaccctattccctatatagtgcactactttagaccagagccctatgacaccctattccctatatagtgcactactttagaccagaagtccctgggcattggtagacagtagtgcactactttagaccagaagtccctgggcgttggtagacagtagtgcactactttagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402099 lncRNA upstream 6423 44538600 ~ 44539506 (+) True G354842
TU402096 lncRNA upstream 7601 44537843 ~ 44538328 (+) True G354841
TU402091 lncRNA upstream 21555 44523543 ~ 44524374 (+) True G354837
TU402089 lncRNA upstream 27504 44518009 ~ 44518425 (+) True G354835
TU402086 lncRNA upstream 41764 44503068 ~ 44504165 (+) True G354833
TU402107 lncRNA downstream 30579 44576881 ~ 44577456 (+) True G354850
TU402118 lncRNA downstream 59775 44606077 ~ 44608114 (+) False G354857
TU402121 lncRNA downstream 59775 44606077 ~ 44607551 (+) False G354857
TU402124 lncRNA downstream 61952 44608254 ~ 44608682 (+) True G354857
TU402129 lncRNA downstream 71595 44617897 ~ 44619579 (+) True G354858
XM_036976422.1 mRNA upstream 208951 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 435661 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 435661 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 776946 43740263 ~ 43768983 (+) False slc2a12
XM_036976429.1 mRNA downstream 389372 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1187340 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 1187340 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 1187340 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 1187340 45733642 ~ 45752953 (+) False LOC110510408
TU402072 other upstream 83938 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 435905 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 555290 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 934367 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1266912 43253903 ~ 43279017 (+) True sh3bgrl2
TU402960 other downstream 428734 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 517311 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1073964 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 1143133 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 1187367 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile