RNA id: TU402129


Basic Information

Item Value
RNA id TU402129
length 385
lncRNA type intronic
GC content 0.47
exon number 2
gene id G354858
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44617897 ~ 44619579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcagctactctacctggggtccattaactactgaacatgtagcagctactctacctggggtccattaactactgaacatcagctactctacctggggtccattaactactgaacatgtagcagctactctacctggggtccattaactactgaacatgtagcagctactcttcctggggttcattaacatgtagcagctactcttcctggggttcattaacatgtagcagctactctacctggggtccattaactactgaacatgtagcagctactcttcctggggttcattaacatgtagcagctactctacctggggtccattaacatgtagcagctactcttcctggggtccattaacatgtagcagctactctacctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402124 lncRNA upstream 9215 44608254 ~ 44608682 (+) True G354857
TU402118 lncRNA upstream 9783 44606077 ~ 44608114 (+) False G354857
TU402121 lncRNA upstream 10346 44606077 ~ 44607551 (+) False G354857
TU402107 lncRNA upstream 40441 44576881 ~ 44577456 (+) True G354850
TU402101 lncRNA upstream 71595 44545929 ~ 44546302 (+) True G354844
TU402132 lncRNA downstream 3631 44623210 ~ 44630693 (+) False G354860
TU402136 lncRNA downstream 4485 44624064 ~ 44625092 (+) True G354861
TU402131 lncRNA downstream 5534 44625113 ~ 44631036 (+) False G354860
TU402133 lncRNA downstream 5534 44625113 ~ 44630693 (+) True G354860
TU402041 lncRNA downstream 29947 44649526 ~ 44655179 (+) True G354793
XM_036976422.1 mRNA upstream 280919 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 507629 44084616 ~ 44110268 (+) False myb
XM_036976419.1 mRNA upstream 507629 44084617 ~ 44110268 (+) False myb
XM_036976410.1 mRNA upstream 848914 43740263 ~ 43768983 (+) False slc2a12
XM_036976429.1 mRNA downstream 316095 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 1114063 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 1114063 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 1114063 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 1114063 45733642 ~ 45752953 (+) False LOC110510408
TU402072 other upstream 155906 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 507873 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 627258 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 1006335 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1338880 43253903 ~ 43279017 (+) True sh3bgrl2
TU402960 other downstream 355457 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 444034 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 1000687 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 1069856 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 1114090 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile