RNA id: TU402852


Basic Information

Item Value
RNA id TU402852
length 352
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G355330
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44745761 ~ 44746112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagacctcactcccccctatctgagatatctactgcagccctcatcctccacatacaacacccgttctgccagtcacattctgttaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagtttgcttcagctagcgactggaacgagctgcaacaaacactcaaactggacagttttatctcaatctcttcattcaaagactcaatcatggaaactcttactgacagttgtggctgctttgtgtaatgtattgttgtctctaccttcttgactttgtgctgttgactgtgcccaataatgtttgtaccatgttatgtgtttctaccatgttgtgttgctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402847 lncRNA upstream 6084 44739427 ~ 44739677 (+) True G355325
TU402812 lncRNA upstream 38984 44705691 ~ 44706777 (+) True G355300
TU402037 lncRNA upstream 43972 44701097 ~ 44701789 (+) True G354789
TU402159 lncRNA upstream 62105 44683390 ~ 44683656 (+) True G354877
TU402157 lncRNA upstream 68634 44676764 ~ 44677127 (+) True G354875
TU402877 lncRNA downstream 76791 44822903 ~ 44824235 (+) True G355353
TU402941 lncRNA downstream 103056 44849168 ~ 44849701 (+) True G355401
TU402942 lncRNA downstream 113268 44859380 ~ 44859831 (+) True G355402
TU402950 lncRNA downstream 186355 44932467 ~ 44938219 (+) True G355407
TU402963 lncRNA downstream 187672 44933784 ~ 44936311 (+) True LOC118964488
XM_036976424.1 mRNA upstream 45357 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 45357 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 408783 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 635493 44084616 ~ 44110268 (+) False myb
XM_036976429.1 mRNA downstream 189562 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 987530 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 987530 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 987530 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 987530 45733642 ~ 45752953 (+) False LOC110510408
TU402072 other upstream 283770 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 635737 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 755122 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 1134199 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1466744 43253903 ~ 43279017 (+) True sh3bgrl2
TU402960 other downstream 228924 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 317501 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 874154 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 943323 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 987557 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile