RNA id: TU402877


Basic Information

Item Value
RNA id TU402877
length 1215
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G355353
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44822903 ~ 44824235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaggacaacaaccacccgagccactgcctgttcaccccgatatcatccagaaggcgaggtcagtacaggtgcatcaaagcagggaccaagagcctgaaaaacagcttctatctcaaggccatcagactgttaaacagccatcactaacataaagaggctgctgccaacatacagaatcaaatcactggccactttagtaAATGGATTTAATGAAGGTATCaccagtcactttaaataatgccactttaatcatgtttacataccctacattactcatctcatatgtatatactgtactctacaccatctactgcatcttgcctatgccgcacagccatcgctcatccatttatttatatgtacatattcttattcatccctttagatttgtgcgTATTAGGTAGTCATTGTGAAATGGttaaattacttgttagatattactgcactgtcggaactagaagaacaagcatttcgctgcactcgcattaacatctgctaaccatgtgtatgtgaccaatcaaatttgatttacctttagaccagagccctattccctatatagtgcactactttagaccaaagccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccaaagccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagaaccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccaaagccctattccctatatagtgcactactttagaccaaagccctattccctatatagtgcactactttagaccagatccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagaacccttgTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402852 lncRNA upstream 76791 44745761 ~ 44746112 (+) True G355330
TU402847 lncRNA upstream 83226 44739427 ~ 44739677 (+) True G355325
TU402812 lncRNA upstream 116126 44705691 ~ 44706777 (+) True G355300
TU402037 lncRNA upstream 121114 44701097 ~ 44701789 (+) True G354789
TU402159 lncRNA upstream 139247 44683390 ~ 44683656 (+) True G354877
TU402941 lncRNA downstream 24933 44849168 ~ 44849701 (+) True G355401
TU402942 lncRNA downstream 35145 44859380 ~ 44859831 (+) True G355402
TU402950 lncRNA downstream 108232 44932467 ~ 44938219 (+) True G355407
TU402963 lncRNA downstream 109549 44933784 ~ 44936311 (+) True LOC118964488
TU402958 lncRNA downstream 114090 44938325 ~ 44939825 (+) True G355411
XM_036976424.1 mRNA upstream 122499 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 122499 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 485925 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 712635 44084616 ~ 44110268 (+) False myb
XM_036976429.1 mRNA downstream 111439 44935674 ~ 44937203 (+) False LOC118964488
XM_021591760.1 mRNA downstream 909407 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 909407 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 909407 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 909407 45733642 ~ 45752953 (+) False LOC110510408
TU402072 other upstream 360912 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 712879 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 832264 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 1211341 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1543886 43253903 ~ 43279017 (+) True sh3bgrl2
TU402960 other downstream 150801 44975036 ~ 44975829 (+) True G355413
TU403052 other downstream 239378 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 796031 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 865200 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 909434 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile