RNA id: TU402960


Basic Information

Item Value
RNA id TU402960
length 794
RNA type TUCP
GC content 0.43
exon number 1
gene id G355413
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44975036 ~ 44975829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACCACTGTTTATAATAGGCAATGCTGTCTAGAATAAACCCATCAATTCTAATGACTTAAATCAAATGTAAAGTCAGgaacaatatatacatatatatgtgtttATTTTCAGACGTTTTAAATGGTTCTCATACGTTGTTGTCTTCTAATTCAAATTATCAGGATCATGTTCATCAAACCAATTGAATAATCAGGGATTaaagaaggtagagacagcaatacatcacacaaagcagccacaactgtcagtaagagtgtccatgatggagtctttgaatgaagagatggaaataaaactgtccagtttgagtgttttgttgcagatcgttccagtcgctagctgcagcgaactgaaaagacgagcgacccagggatgtgtgtgcttagggaacctttaacagaatgtgactggcagaacggaaCGGCCTTAAGTGCACATGAGAAAGTACTTCAGGGGTACTTCAGGGGTCCTCCGGGGGTACTtcgggggtacttcaggggtacctCGGGCAGAGCAAAATgtagttggtggtacagtaaccaaaaacGGTTGAGAACCActatagtgtatatatacaccacTGGGCTTCACTCAAGAGGAAGTTTCCACCATATCTCTTATACCAGTCATTTTAGTTTCAAATCACTATGGGAGGAAGCGTGGCCAATGATTGGGATGGCCAATGATTGGGACCAATGTTATTTCCCTGTACATATAATGGGAGaactccatcctctcctccctcctctcctgctcatctcctccttcctcccctccatcctctcctcgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402996 lncRNA upstream 7975 44966375 ~ 44967061 (+) True G355449
TU402992 lncRNA upstream 22372 44952262 ~ 44952664 (+) True G355445
TU402958 lncRNA upstream 35211 44938325 ~ 44939825 (+) True G355411
TU402950 lncRNA upstream 36817 44932467 ~ 44938219 (+) True G355407
TU402963 lncRNA upstream 38725 44933784 ~ 44936311 (+) True LOC118964488
TU402954 lncRNA downstream 1445 44977274 ~ 44991382 (+) True G355410
TU403004 lncRNA downstream 3531 44979360 ~ 44985071 (+) True G355454
TU403026 lncRNA downstream 48785 45024614 ~ 45025668 (+) True G355473
TU403036 lncRNA downstream 66977 45042806 ~ 45043700 (+) True G355480
TU403009 lncRNA downstream 77096 45052925 ~ 45053349 (+) True G355458
XM_036976429.1 mRNA upstream 37833 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 274632 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 274632 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 638058 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976418.1 mRNA upstream 864768 44084616 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 757813 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 757813 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 757813 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 757813 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 757813 45733642 ~ 45752953 (+) False LOC110510408
TU402072 other upstream 513045 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 865012 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 984397 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 1363474 43610962 ~ 43611562 (+) True G354462
TU400954 other upstream 1696019 43253903 ~ 43279017 (+) True sh3bgrl2
TU403052 other downstream 87784 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 644437 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 713606 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 757840 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 757840 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile