RNA id: TU403004


Basic Information

Item Value
RNA id TU403004
length 1391
lncRNA type intronic
GC content 0.47
exon number 2
gene id G355454
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 44979360 ~ 44985071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcttgtgttcctagctccaacagtgcagtaatatctaactaaatgcttgtgttcctagctccaacagtaatacctacctaaatgctccgtaaacactccacccagctggtctgcacatgctctgaggacgcggctagggatgccgtctgagcCGGCAGCCTTGTgtgggttaacacgcttaaatgtcttactcacgtcgaccACGGAGGACCACAGTCCTTGGCCGAGGGCTGCGTCGGtagcactgtgttatcctcaaagcgggtgaagaaggtgtttagcttgtctgggagcaagtcgtcagtggctggttttccctttgtaatttgTCATTGtccacatacatctcgtgtctgagcaGTTGAATTCCGACTCCACTttgtactgatgttttgcctgtttgattgactTACGGAGGGCATAGCTGGACAGTTTGTACTCAACCATATTTCCAGTGACCTTGTCGTGGTTTGCGCTTTcacggtttttggtttgggtaggttttaatagtcatagTGGGAaaaacatcccctatacacttcctgatgaactcagtcaccgtgtaaacgtcaatgttattctcagaggctacccgggaACAAATcacagtccgcgtgatcaaactatcttgaagcatggattacGATTTGTCAGACCAGCATTAAATAGATcttagcatgggtacttcctgtttgagtttctgcctataggaagggtaGAGCAGAAGGGAggtgtgatctgatttgccgatgGGAGGGCAGGGGAGGTCCTTGTAGCCATCCCGAAAGGGAGAGGGACAATGGTCGAGAGTTTTTGAAGCACAAGTACAAcaggcaatgtgttgatagaacttcggtaatGTTTTCCTCCCAAAATGtttttgttaaaatccccagctacaataaatgtggcctcGGGATATGTAGTTTCCTGTTAGCACAAAGCCAAGTGTAGTTCCTTGaaggccgtcgtggtatcggcttgagggggaatatacacggttgtgactataaccgaagagaattatCTGGGGCGGTAAtatgattgtgaggtattctaggtcaggtgaacaaaataacttgagttcctgtacgttattacaatcacaccatgagtagttaatcatgaaacatacacctccacctttcttcttcccggagagttctttattcctgtctgcccaatgtactgagaacccagctggctgtatggacggggacagtatatccagagagttctttattcctgtctgcccgatgtactgagaacccagctggctgtatggatggggacagtatatccagagagttctttattcctgtctgcccgatgtactgagaacccagctggctgtatggacggggacagtatatccagagagttctttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402996 lncRNA upstream 12299 44966375 ~ 44967061 (+) True G355449
TU402992 lncRNA upstream 26696 44952262 ~ 44952664 (+) True G355445
TU402958 lncRNA upstream 39535 44938325 ~ 44939825 (+) True G355411
TU402950 lncRNA upstream 41141 44932467 ~ 44938219 (+) True G355407
TU403026 lncRNA downstream 39543 45024614 ~ 45025668 (+) True G355473
TU403036 lncRNA downstream 57735 45042806 ~ 45043700 (+) True G355480
TU403009 lncRNA downstream 67854 45052925 ~ 45053349 (+) True G355458
TU403048 lncRNA downstream 76696 45061767 ~ 45062619 (+) False G355487
TU403049 lncRNA downstream 76696 45061767 ~ 45062619 (+) False G355487
XM_036976429.1 mRNA upstream 42157 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 278956 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 278956 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 642382 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 869092 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 748571 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 748571 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 748571 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 748571 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 748571 45733642 ~ 45752953 (+) False LOC110510408
TU402960 other upstream 3531 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 517369 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 869336 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 988721 43990123 ~ 43990639 (+) True G354630
TU401635 other upstream 1367798 43610962 ~ 43611562 (+) True G354462
TU403052 other downstream 78542 45063613 ~ 45064026 (+) True G355488
TU403390 other downstream 635195 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 704364 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 748598 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 748598 45733669 ~ 45752940 (+) False LOC110510408

Expression Profile