RNA id: TU403333


Basic Information

Item Value
RNA id TU403333
length 311
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G355704
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45460344 ~ 45492400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcttcaatttaagcctactagaaagtgtgtgcccccaGGCCTGAAGTCTTTCCACTACCAAAGAATAGtgaagccccctttactggctcataTAGGTGACCAATCatcctgttaccaacccttagtaaacttctgaaaaaatggtgtttgaccagatacaatgctatttcacagtaaacaaatcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgaattgttaaaaaagtttgaaatatccaataaatgttgttccacttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403293 lncRNA upstream 103663 45356238 ~ 45356681 (+) True G355676
TU403048 lncRNA upstream 397725 45061767 ~ 45062619 (+) False G355487
TU403049 lncRNA upstream 397725 45061767 ~ 45062619 (+) False G355487
TU403050 lncRNA upstream 397725 45061767 ~ 45062619 (+) True G355487
TU403009 lncRNA upstream 406995 45052925 ~ 45053349 (+) True G355458
TU403385 lncRNA downstream 127866 45620266 ~ 45624004 (+) False G355753
TU403396 lncRNA downstream 127866 45620266 ~ 45624004 (+) True G355753
TU403399 lncRNA downstream 134366 45626766 ~ 45627418 (+) True G355755
TU403415 lncRNA downstream 148103 45640503 ~ 45694217 (+) False G355763
TU403430 lncRNA downstream 152749 45645149 ~ 45645566 (+) True G355769
XM_036976429.1 mRNA upstream 523141 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 759940 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 759940 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1123366 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 1350076 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 241242 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 241242 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 241242 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 241242 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 241242 45733642 ~ 45752953 (+) False LOC110510408
TU403052 other upstream 396318 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 484515 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 998353 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 1350320 44109079 ~ 44110024 (+) True myb
TU401825 other upstream 1469705 43990123 ~ 43990639 (+) True G354630
TU403390 other downstream 127866 45620266 ~ 45624004 (+) False G355753
TU403416 other downstream 197035 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 241269 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 241269 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other downstream 241269 45733669 ~ 45752940 (+) True LOC110510408

Expression Profile