RNA id: TU403399


Basic Information

Item Value
RNA id TU403399
length 587
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G355755
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45626766 ~ 45627418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacaacactatcaacaaggcaggtcctacaggccctagtttctaccttcttaacagtactatcaacaaggcaggtcctacaggccctagttttgtcgcaccttgactactgttcagttgtgtggtcaggtgccacaaaaaaggacttttaataatatgcatttcAATCTcgcctggctcaaagtggaggagagattgacttcctcaCTACTTGTTATTTGTGAGAAgtgttgacatgttgaaagcatgGAGCTATCTGTTTAAActacagctcagacacccatgcatactccacaagacatgttctaggggttagggttaagggtaggggtcaggggttaggctATGTGTCCTACCTCCATTAGCTTGGTGTTCTAagtgttagggttaagggttaagggtaggggtcAAGGGTTATACTATGTGTCCTACCTCCATTAGcttcaggcttggtgttcttgaTGTACGCTGAGAACTTGGCAAAGATGTTGTTTCCAGCTGTGTTGGACTCTCTCTGCTTGGCTGCCAACTTAGGGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403385 lncRNA upstream 2762 45620266 ~ 45624004 (+) False G355753
TU403396 lncRNA upstream 2762 45620266 ~ 45624004 (+) True G355753
TU403333 lncRNA upstream 134366 45460344 ~ 45492400 (+) True G355704
TU403293 lncRNA upstream 270085 45356238 ~ 45356681 (+) True G355676
TU403048 lncRNA upstream 564147 45061767 ~ 45062619 (+) False G355487
TU403415 lncRNA downstream 13085 45640503 ~ 45694217 (+) False G355763
TU403430 lncRNA downstream 17731 45645149 ~ 45645566 (+) True G355769
TU403439 lncRNA downstream 28689 45656107 ~ 45656994 (+) True G355776
TU403443 lncRNA downstream 37332 45664750 ~ 45666148 (+) True G355780
TU403445 lncRNA downstream 38992 45666410 ~ 45667582 (+) False G355781
XM_036976429.1 mRNA upstream 689563 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 926362 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 926362 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1289788 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 1516498 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 106224 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 106224 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 106224 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 106224 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 106224 45733642 ~ 45752953 (+) False LOC110510408
TU403390 other upstream 2762 45620266 ~ 45624004 (+) False G355753
TU403052 other upstream 562740 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 650937 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 1164775 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 1516742 44109079 ~ 44110024 (+) True myb
TU403416 other downstream 62017 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 106251 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 106251 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other downstream 106251 45733669 ~ 45752940 (+) True LOC110510408
TU404485 other downstream 738808 46366226 ~ 46373781 (+) True G356586

Expression Profile