RNA id: TU403415


Basic Information

Item Value
RNA id TU403415
length 2652
lncRNA type read_through
GC content 0.38
exon number 2
gene id G355763
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45640503 ~ 45698847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCCGAAGgcgcttcaacaaaatactgagtaaaggggtctgaatacttacggaaatgttttcatttgttgcttttttatacatttgcaaacatttcagaaaaactgttttttgctttgtcattatgggatattgtgatgtcattatgggatattgtgatgtcattatgggatattgtgatgtcattatggggtattgtgatgtcattatgggatattgtgatgtcaataTGGGATATTGGgtctagattgatgagggaaaaaaagctatttaatccattttagaagaaggctgtaacgtaacaaaatgtggaaaagtcaaggggtctgaatactttccgaaggctctgTAAATAAAGAGTGCAAAAACACACATGTCCTACACAGCACTTCATCGCACTGCTCCCTCATCACGATTCAGTTAATTTAGCGCAAAATGGCCTCTCAGACCGCACAGCTCAGTAGTCAACTATCAACACAGAAAGTTAAGAATTACACATATTATTCAGAATCCCTCCTAAATTAAGAATCCCTCCTAGTCCTTAAAACCTATTGCACTTCACACATCACAGTCCTTAAAACATATAGCAATTTTCACCAGCGAATGGTTATGACATCACCAACTAATGGGCagggcttgacattcaggcctGCGAGCTGGCAACTTCTGCCGAGCTCACCGGGCCAATTAAATCAAGCTTTCACATGACCCGTTTGGGCCAGTACATTTCCAAactacaaaacagaaaataatgaTTTATATTTGGATTTAATCCTTGACAATCTTCCTGACATCTGACGATTCACACTTGTTATCAACCAGCATTTGGTTTCCAAGCTGAGGCAAAGCCTTCCATCTGGAGTAAGCCCCGTCACAGTATGGCCTAGATACTCGCGTCAGACCGTTCTCAGCGGAGGCAGAATAAAAAAAAAGTCCTCCCCCTGATCGTCAGTATTATTTCATATCATTATTAGCAAGGCAAGGTTTACCTAGAACTAGGCCTACACTTTGTAGCTGCTTGCTTATCAAGACATCCATTCTTTACACAAATCACTTGTTAGaagaaaaaaaggaaaaataatattgtaataatgctattctgtaacacacacaagtttggggtcacttagaaatgtccttgtttaaaatatcaaattgatcagtgtagacattgttaaaaaaaaaaaacctcaAGGATCCGCCCCTTCTTTTTCAATTTCCGCATAAAACGACATATtctaaatctaactgcctgtaccACAGGACCTGAcgcaatgatatgcatattctaaatctaactgcctgtacctCAGGACCTGACGCAAGGATATACATATTCTTGGGACCATTTGAAAGGACACACTTTgtagtttgtggaaatgtgaaaggaatataggagaatataacacattagatctggtataagataatacaaagacaaaaccaaccgttcttttgtaCCATCGTCTTCGAAATGTaacagaaaggccataatgcaTTATTCCAGCCcaagtgcaatttagattttggccactagatggcagtgtatGTGCACATTTTTTGACTGATCCagtgaaccattgcatttctattCAAAATTTTGTCTCAAGAccgcccaaatgtgcctaatgtGTTTATTAATAATTTTTCATGTTccaaattgtgcactctcctcaaacaatagcatggtattctttcactgtaatagctactgtaaattggacagtgcagttagattaagaatttaagctttctgtcaATATCAGATAtttctatgtcctgggaaatgttcttgttacttacaacctcatgctaatcgcattagcctacatctTCGATCCCgaagttaatgttgtaaatgactattgtagctggaaaaggctgattttttacggaatatctacataggcgtaggcccattaccagcaaccatcactcctgtgttccaatggcatgttgtcttagctaatccaagtttgtcattttaaaaggctgattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgtctgattaaagaaggaataaaactggccttctttaaactagttgagtatctggagcatcagcatttgtgggttcgattacaggcctAAATGGtgagaaacaaataactttcttctgaaactcgtcagtctattttgttctgagaaatgaaggctatttcatgcgagaaattgccaagaaactgaagatcttgtacaacgctccCTTCATAGAGCAGCGCAAACTGggtctaaccaaaatagaaagagtgggtggtcccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagaaacagatgcctcactaGTCCTCAACttacagcttcattaaatagtacccgtaaaacaccagtctcaacgtcaacagtgaagaggcgactccgggagttgcaaagaaaaagccatctctcagactggccaataaaaataaaatattaagatgggcaaaagaacacagacactggacagaggaactctgcctagaaggccgtttccagctataatagtcatgtctacactgtatttctgatcaatttgatgtaatttaaaaaaaggtacaaaaaaatgtgcttttctttaaaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403399 lncRNA upstream 13085 45626766 ~ 45627418 (+) True G355755
TU403385 lncRNA upstream 16499 45620266 ~ 45624004 (+) False G355753
TU403396 lncRNA upstream 16499 45620266 ~ 45624004 (+) True G355753
TU403333 lncRNA upstream 148103 45460344 ~ 45492400 (+) True G355704
TU403293 lncRNA upstream 283822 45356238 ~ 45356681 (+) True G355676
TU403426 lncRNA downstream 6371 45700588 ~ 45703629 (+) True G355765
TU403460 lncRNA downstream 11631 45705848 ~ 45709210 (+) False G355787
TU403462 lncRNA downstream 11631 45705848 ~ 45707158 (+) True G355787
TU403806 lncRNA downstream 22604 45716821 ~ 45717041 (+) True G356038
TU403807 lncRNA downstream 23320 45717537 ~ 45717778 (+) True G356039
XM_036976429.1 mRNA upstream 703300 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 940099 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 940099 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1303525 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 1530235 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
TU403390 other upstream 16499 45620266 ~ 45624004 (+) False G355753
TU403052 other upstream 576477 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 664674 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 1178512 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 1530479 44109079 ~ 44110024 (+) True myb
TU403800 other downstream 39452 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 39452 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other downstream 39452 45733669 ~ 45752940 (+) True LOC110510408
TU404485 other downstream 672009 46366226 ~ 46373781 (+) True G356586
TU404630 other downstream 877338 46571555 ~ 46572865 (+) True G356693

Expression Profile