RNA id: TU403414


Basic Information

Item Value
RNA id TU403414
length 6136
lncRNA type read_through
GC content 0.40
exon number 2
gene id G355763
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45640503 ~ 45698847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaaaggaccagctgacatcatgtcagtgattatctcgttaacacaggtgtgagtggtGACGAGGggaaggctggagatcactctgtcatgcagattgagtttgaataacagactggaagcttcaaaaggagggtggtgcttggaatcattgttcttcctctgtcaaccatggtaacctgcaaggaaacacgttcCATCATTGCACAGCAAAAAAAGGGCTTCggaggcaaggatattgctgccaataAGATTGCaactaaatcaaccatttatcagatcatcaagaacttcaaggagagcagttcaattgttgtgaagaaggattcagggcgcccaagaaagtccagcaagcgccaggaccgtctcctaaagttgattcagctgcgggatcggggcaccaccagtacagagcttgctcaggaatagcagcaggcaggtgtgagtgcatctgcaagcacagtgaggtgaagacttttggaggatggcctggtgtcaagaagggcagcaaagatgccacttctctccaggaaaaacatcagggacagactgatattctgcaaaaggtacagggattggactgctgaggactggagtaaagtcattttctctgatgaatcccctttccgattgtttggggcatccggaaaaaagcttgtccggagaagacagggtgagcgctaccatcagtcctgtgtcatgccaacattaaagcatcctgagaccattcacgtgtggggttgcttctcagccaagggagtgggctcactcacaattttgcctaagaacacagtcatgaataaagaatggtaccaacacatcctccgagagcaacttctcccaaccatccaggaacagtttggtgatgaacaatgcgtttccagcatgatggagcaccatgccataaggcaaaagtgataactaagtggctcggggaacaaaacatcaatattttggggccatggccaggaaactccccagaccttaatcccattcagaacttgtggtcaatcctgaagaggcgggtggacaaacaaaaacccacaaattctgggCTGCCATCAGTTAATTGACAGTATGCCAGgatggattgcagaggtcttgaaaaagaagggtcaacactgcaaatattgactctttgcatcaacttaatgtaattgtcaataaaagcctttgacacttatgaaatgcttgtaattatacttcagtattccatagtaacatctgacaaaaatatctaaaagacACTGAAACAGCAatctttgtggaaattaatatttgtgtcattctctcaacttttggccatgactgtacacccacaaaaacatacagtgcaATCAGTATAACATTGAAATGCCTCAGACATGACGAAAACAAGCCCAGATTCTCCTTTTAATGTACATAACTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACATACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACAACACCTCTTTAACGTACCTCATTAATTACACCTCTAATACTGTAAGATATCATAAAACGCGAGATGAGATATTACTTTCCTTTTTATTAATATTAGATCAAATTAATGTTAATCCCATTTTGCCATGTAaataaaggtatttctgtttttatttttaatacatttgaatttTACATTTGAAAACAACCTttgtcactttgtcattatggggtattgtgtgtagattgaagaggaaaATCATTTCATAAATTTTAGACTGGGTTGTAAAAAGAAATGGTGggaaaagtcatggggtctgaatactttctgagtgtCTCCTTATTTATTGCATCACAGTGAAGTTGTCTATTTTTGGGCACTGGTGTTcattaaatcaatcaatcaatgagtCTAACAAAAATCGCACAAAGGACATTTTCTACCACTCAATAATCTGAATTAAATAAATCTACTACAATGATTTATAGTATCGATACAATAAAAAGGTATCCTATGACAGAGTAGGAAGCTGCTATGTCAACTCTTTCAATACATCAGTTATCAACATCAAAAAAGCATtcacagtgccttcggaatgtattcagacccagTGACTttatccatattttgttacgttacagccttattctataatggattaaaacaacaaaaaaatccccatcaatctacacataatacctcattaatgacaaagcaaaaaacaaagtattcagacatcctgtttccattgatcatccttgagatgtttctacaacgtgaTTAGAGTCCACCCacgttggtaaattcaattgattggacatgatttggaaaggcacacacacttgtctatataaggacccacagttgacagtgcatgtcagagcaaaaaccaagccatgaggtcaaaggagttgtcggtagagctcagagacaggattgtgtcgaggcacagatctggggaagggtaccaaaacatttctgcagcattgaaggtccgcaagaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaactcttcctagagctggccgcacggccaaactgagcaatcaggggacaaaagccttggtcagggagatgacaaAGAACCagacggtcactctgacagagctctagagttcctctgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccatcaatcaggcctttatggtagagtggccagacggaagccactcctcagaaaaaggcacacaacagcccgcttagagtttgccaaaaggcacctaaagactcttagaccatgtgaaacaagattctctggtctgatgaaaccaataatgaactctttggcctgaatgccaagtgtcacgtctggaggaaacctggcaccatccctacggtgaagcatggttgtggcagcatcatgctgtggggatgtttttcagcagaagTGACTGGGAGTGAtggtcaagggaaagatgaacagagccaaGTACAGAGAAATCCCTGATGATGatgctccagagcgttcaggtcctcagactggggcgaaggttcaccttccaacaggacacgtctctgaatgtcctttagtgacccagcaagagcctggacttgaacccgatcgaacatctctggagagacctgaaaatagctgtgcagcgacactccccatccaacctgacagagattaaaagaatctgcagagaagaatgggagaaactcctcaaatacaggtgtgccaagcttgaattTATAAACatatgtttaacctttatttaactaggcaagtcatacccaagaagacttgaggttgtaatcgctgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatacttacggaaatgttttcatttgttgcttttttatacatttgcaaacatttcagaaaaactgttttttgctttgtcattatgggatattgtgatgtcattatgggatattgtgatgtcattatgggatattgtgatgtcattatggggtattgtgatgtcattaTGGGATATTGGgtctagattgatgagggaaaaaaagctatttaatccattttagaagaaggctgtaacgtaacaaaatgtggaaaagtcaaggggtctgaatactttccgaaggctctgTAAATAAAGAGTGCAAAAACACACATGTCCTACACAGCACTTCATCGCACTGCTCCCTCATCACGATTCAGTTAATTTAGCGCAAAATGGCCTCTCAGACCGCACAGCTCAGTAGTCAACTATCAACACAGAAAGTTAAGAATTACACATATTATTCAGAATCCCTCCTAAATTAAGAATCCCTCCTAGTCCTTAAAACCTATTGCACTTCACACATCACAGTCCTTAAAACATATAGCAATTTTCACCAGCGAATGGTTATGACATCACCAACTAATGGGCagggcttgacattcaggcctGCGAGCTGGCAACTTCTGCCGAGCTCACCGGGCCAATTAAATCAAGCTTTCACATGACCCGTTTGGGCCAGTACATTTCCAAactacaaaacagaaaataatgaTTTATATTTGGATTTAATCCTTGACAATCTTCCTGACATCTGACGATTCACACTTGTTATCAACCAGCATTTGGTTTCCAAGCTGAGGCAAAGCCTTCCATCTGGAGTAAGCCCCGTCACAGTATGGCCTAGATACTCGCGTCAGACCGTTCTCAGCGGAGGCAGAATAAAAAAAAAGTCCTCCCCCTGATCGTCAGTATTATTTCATATCATTATTAGCAAGGCAAGGTTTACCTAGAACTAGGCCTACACTTTGTAGCTGCTTGCTTATCAAGACATCCATTCTTTACACAAATCACTTGTTAGaagaaaaaaaggaaaaataatattgtaataatgctattctgtaacacacacaagtttggggtcacttagaaatgtccttgtttaaaatatcaaattgatcagtgtagacattgttaaaaaaaaaaaacctcaAGGATCCGCCCCTTCTTTTTCAATTTCCGCATAAAACGACATATtctaaatctaactgcctgtaccACAGGACCTGAcgcaatgatatgcatattctaaatctaactgcctgtacctCAGGACCTGACGCAAGGATATACATATTCTTGGGACCATTTGAAAGGACACACTTTgtagtttgtggaaatgtgaaaggaatataggagaatataacacattagatctggtataagataatacaaagacaaaaccaaccgttcttttgtaCCATCGTCTTCGAAATGTaacagaaaggccataatgcaTTATTCCAGCCcaagtgcaatttagattttggccactagatggcagtgtatGTGCACATTTTTTGACTGATCCagtgaaccattgcatttctattCAAAATTTTGTCTCAAGAccgcccaaatgtgcctaatgtGTTTATTAATAATTTTTCATGTTccaaattgtgcactctcctcaaacaatagcatggtattctttcactgtaatagctactgtaaattggacagtgcagttagattaagaatttaagctttctgtcaATATCAGATAtttctatgtcctgggaaatgttcttgttacttacaacctcatgctaatcgcattagcctacatctTCGATCCCgaagttaatgttgtaaatgactattgtagctggaaaaggctgattttttacggaatatctacataggcgtaggcccattaccagcaaccatcactcctgtgttccaatggcatgttgtcttagctaatccaagtttgtcattttaaaaggctgattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgtctgattaaagaaggaataaaactggccttctttaaactagttgagtatctggagcatcagcatttgtgggttcgattacaggcctAAATGGtgagaaacaaataactttcttctgaaactcgtcagtctattttgttctgagaaatgaaggctatttcatgcgagaaattgccaagaaactgaagatcttgtacaacgctccCTTCATAGAGCAGCGCAAACTGggtctaaccaaaatagaaagagtgggtggtcccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagaaacagatgcctcactaGTCCTCAACttacagcttcattaaatagtacccgtaaaacaccagtctcaacgtcaacagtgaagaggcgactccgggagttgcaaagaaaaagccatctctcagactggccaataaaaataaaatattaagatgggcaaaagaacacagacactggacagaggaactctgcctagaaggccgtttccagctataatagtcatgtctacactgtatttctgatcaatttgatgtaatttaaaaaaaggtacaaaaaaatgtgcttttctttaaaaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403446 lncRNA upstream 19922 45666410 ~ 45668139 (+) True G355781
TU403445 lncRNA upstream 20479 45666410 ~ 45667582 (+) False G355781
TU403443 lncRNA upstream 21913 45664750 ~ 45666148 (+) True G355780
TU403439 lncRNA upstream 31067 45656107 ~ 45656994 (+) True G355776
TU403430 lncRNA upstream 42495 45645149 ~ 45645566 (+) True G355769
TU403426 lncRNA downstream 6371 45700588 ~ 45703629 (+) True G355765
TU403460 lncRNA downstream 11631 45705848 ~ 45709210 (+) False G355787
TU403462 lncRNA downstream 11631 45705848 ~ 45707158 (+) True G355787
TU403806 lncRNA downstream 22604 45716821 ~ 45717041 (+) True G356038
TU403807 lncRNA downstream 23320 45717537 ~ 45717778 (+) True G356039
XM_036976429.1 mRNA upstream 750858 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 987657 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 987657 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1351083 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 1577793 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 39425 45733642 ~ 45752953 (+) False LOC110510408
TU403390 other upstream 64057 45620266 ~ 45624004 (+) False G355753
TU403052 other upstream 624035 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 712232 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 1226070 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 1578037 44109079 ~ 44110024 (+) True myb
TU403800 other downstream 39452 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 39452 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other downstream 39452 45733669 ~ 45752940 (+) True LOC110510408
TU404485 other downstream 672009 46366226 ~ 46373781 (+) True G356586
TU404630 other downstream 877338 46571555 ~ 46572865 (+) True G356693

Expression Profile