RNA id: TU403443


Basic Information

Item Value
RNA id TU403443
length 1013
lncRNA type intronic
GC content 0.39
exon number 4
gene id G355780
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45664750 ~ 45666148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAAAAAGGAAGCATGAGAATTCCTGATTGACCATACTGCCATGACTATATACTGAAAAAACAAGATGGATGAGAGCTTCCCTTGTGGTGCAGAGGGTAAAAGACCAAAGATTGCAGGTTCAAACACGACTTGTGAAGGGTAAAAAATATGGCTGTTTGTACGATTAAATGCTGTTCATATGTCCTACGAATAAAATTAAAATGGCATGTGTCTCTACATCACCTACAAAAATGAATATCTGTTAAATCTGAaaggaaacataatggggatgtattccaatCTGAaaggaaacataatggggatgtattacaatctggagggaaacataatggggatgtattgcAGTCgatagaaacataatggggatgcattccagtctatagaaacataatggggatgtattccagtctgtagaaacataatggggatgtattccagtctatagaaacataatggggatgtattccagtctggagggaaacataatggggatgtattatattctggagggaaacataatggggatgcaTTCCaatctggagggaaacataatggggatgtattccaatctggagggaaacataatggggatgaaTTCTaatctggagggaaacataatggggatgtattctaatctggagggaaacataatggggatctATTCCAGTCtgtagaaacataatggggatgtattccaatctggagggaaacataatggggatgtattccaatCTGTAGAAACATAATGGAgatgtattccagtctggagggaaacataatggggatgtattccagtctatagaaacataatggagatgtattccagtctggagggaaacataatggagatgtattccagtctggagggaaacataatggagatgtattccagtctggagggaaacataatggggatgtattccagtctatagaaacataatggggatgtattccagtctgtagaaacataatggggatgtattccagtctatagaaacataatggggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403439 lncRNA upstream 7756 45656107 ~ 45656994 (+) True G355776
TU403430 lncRNA upstream 19184 45645149 ~ 45645566 (+) True G355769
TU403399 lncRNA upstream 37332 45626766 ~ 45627418 (+) True G355755
TU403385 lncRNA upstream 40746 45620266 ~ 45624004 (+) False G355753
TU403396 lncRNA upstream 40746 45620266 ~ 45624004 (+) True G355753
TU403445 lncRNA downstream 262 45666410 ~ 45667582 (+) False G355781
TU403446 lncRNA downstream 262 45666410 ~ 45668139 (+) True G355781
TU403414 lncRNA downstream 21913 45688061 ~ 45694217 (+) False G355763
TU403426 lncRNA downstream 34440 45700588 ~ 45703629 (+) True G355765
TU403460 lncRNA downstream 39700 45705848 ~ 45709210 (+) False G355787
XM_036976429.1 mRNA upstream 727547 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 964346 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 964346 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1327772 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 1554482 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 67494 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 67494 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 67494 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 67494 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 67494 45733642 ~ 45752953 (+) False LOC110510408
TU403390 other upstream 40746 45620266 ~ 45624004 (+) False G355753
TU403052 other upstream 600724 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 688921 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 1202759 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 1554726 44109079 ~ 44110024 (+) True myb
TU403416 other downstream 23287 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 67521 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 67521 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other downstream 67521 45733669 ~ 45752940 (+) True LOC110510408
TU404485 other downstream 700078 46366226 ~ 46373781 (+) True G356586

Expression Profile