RNA id: TU403445


Basic Information

Item Value
RNA id TU403445
length 789
lncRNA type intronic
GC content 0.39
exon number 4
gene id G355781
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 45666410 ~ 45668139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacataatggggatgtattccagtctggagggaaacataatggggatgtattctaATCTgaagggaaacataatggggatgtattccagtctgtataaacataatggggatgtattccagtctgtagaaacataatggggatgtattccagtctgtagaaacataatggggatgtattccagtctggagggaaacataatggggatgtattctaATCTgaagggaaacataatggggatgtattccagtctatagaaacataatggggatgtattccagtctgtagaaacataatggggatgtattccagtctatagaaacataacagggatgtattccagtctggagggaaacataatggggatgcattccagtctatagaaacataatggggatgtattccagtctggagggaaacataatggggatgtattccagtctatagaaacataatggggatgtattctaATCTgaagggaaacataatggggatgcattccagtctatagaaacataatggggatgtattctaatctggagggaaacataatggggatgtattccagtctatagaaacataatggggatgtattccagtctatagaaacataatggggatgtattccagtctatagaaacataatggggatgtattctaatctggagggaaacataatggggatgtattccagtctggagggaaacataatggggatgtattccagtctatagaaacataatggggatgtattccagtctatagaaacataatggggatgcattccagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403443 lncRNA upstream 262 45664750 ~ 45666148 (+) True G355780
TU403439 lncRNA upstream 9416 45656107 ~ 45656994 (+) True G355776
TU403430 lncRNA upstream 20844 45645149 ~ 45645566 (+) True G355769
TU403399 lncRNA upstream 38992 45626766 ~ 45627418 (+) True G355755
TU403385 lncRNA upstream 42406 45620266 ~ 45624004 (+) False G355753
TU403414 lncRNA downstream 20479 45688061 ~ 45694217 (+) False G355763
TU403426 lncRNA downstream 33006 45700588 ~ 45703629 (+) True G355765
TU403460 lncRNA downstream 38266 45705848 ~ 45709210 (+) False G355787
TU403462 lncRNA downstream 38266 45705848 ~ 45707158 (+) True G355787
TU403806 lncRNA downstream 49239 45716821 ~ 45717041 (+) True G356038
XM_036976429.1 mRNA upstream 729207 44935674 ~ 44937203 (+) False LOC118964488
XM_036976424.1 mRNA upstream 966006 44401316 ~ 44700404 (+) False nbas
XM_036976425.1 mRNA upstream 966006 44401543 ~ 44700404 (+) True nbas
XM_036976422.1 mRNA upstream 1329432 44309473 ~ 44336978 (+) True ppp1r14c
XM_036976419.1 mRNA upstream 1556142 44084617 ~ 44110268 (+) False myb
XM_021591760.1 mRNA downstream 66060 45733642 ~ 45752953 (+) False LOC110510408
XM_036976442.1 mRNA downstream 66060 45733642 ~ 45752953 (+) False LOC110510408
XM_036976443.1 mRNA downstream 66060 45733642 ~ 45752953 (+) False LOC110510408
XM_036976444.1 mRNA downstream 66060 45733642 ~ 45752953 (+) False LOC110510408
XM_036976445.1 mRNA downstream 66060 45733642 ~ 45752953 (+) False LOC110510408
TU403390 other upstream 42406 45620266 ~ 45624004 (+) False G355753
TU403052 other upstream 602384 45063613 ~ 45064026 (+) True G355488
TU402960 other upstream 690581 44975036 ~ 44975829 (+) True G355413
TU402072 other upstream 1204419 44459693 ~ 44461991 (+) True G354819
TU401884 other upstream 1556386 44109079 ~ 44110024 (+) True myb
TU403416 other downstream 21853 45689435 ~ 45698847 (+) True G355763
TU403800 other downstream 66087 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other downstream 66087 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other downstream 66087 45733669 ~ 45752940 (+) True LOC110510408
TU404485 other downstream 698644 46366226 ~ 46373781 (+) True G356586

Expression Profile