RNA id: TCONS_00030784


Basic Information

Item Value
RNA id TCONS_00030784
length 4500
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_015377
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21000334 ~ 21062305 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACGTTCCAGCTTCATTTGCCCCCTGTGTGACAAAAACTGCATGACGCAGCACCAGCTCACCATGCACATCAGACAGCACAACACGGACAGTGGTGGCACTGACCACTCGTGCAGTATTTGCGGAAAGGCTTTGAGTTCGGCCAGCTCTCTGGACCGACACATGCTGGTTCACAGCGGAGAAAGACCATACAAGTGCTCGGTCTGCGGTCAGACATTCACCACCAATGGAAACATGCACAGGCACATGAAAATTCATGAAAAGGATTCAAGCGGTATTCCTACCCCCAGTTCTTCCCCACTAAACAAGCGCAGACGACTCTCCAGCAAGAGGAAACCCAGTGTGGAGGATGAAGGAGAGCAGGCTGAGGAGCCACCAGTTAAAAAGGTGACTTTGATCCAGAAGCTTAAGGAGGATAATTCTGTGAAGAGTGAAGAAGAGGTATTTCACTGCCCCATCTGCTTTAAGACATTCATCTGTAAAAATGACCTGGAAGCACACATGGAGACACATCCTGACACTACGCTCAGgtGCAACATTTGTTGCATTACCTTTCGCAAACACCGTGGTCTCCTGCGTCATAATGCTGCCATTCATAAACAGCTTCCAACTGACCCCTCTGGGCGACCTTTTATACAGAACAACCCCTCCATCCCACTGGGATTTGGCGATTTAGCTTTCATCGACTTCAGCTGTCAAAAGTTTCCACAAATTGCACAGGTCTGGTGTGAGACTAACCTGCGCCGATGCTCTAGCAAGTTCCATAAGTTTGTTTGTGAGGACTGCAACAAGGCCTTCCCTATTCAGCAATCTCTGGATCTTCACAAGTCTTCACATAACTGTAGTGTAGACACCAGCACTGATCCTCAGGAACATAAAGCAGATGCTGTTATAGACGCCCCAAAAGTAAACTCCCATTCCGAGGATTCCAAGGAGGTCAGTGAACTAGCACCACACGTTGACACTACTAGTTCAGATGGGAAGAATGGTTTCATGGAGCGCCTGGGTCTCCAGCACTCCTCCTTGGCCAAGCTAGAGAAATCAGAAGAGCAGATTCAGCAGGAGGTTTTAGACAGCATTCGATTCATTCGCGTTGAGCCACCATCAACAAATCTACCTCAAGAAACCAGCGGCAGTCTTGGTGTCTCAATCCTTGAGCCTGTCTCTCTTCAAGCAATGAACAAGAACACAGCCCTTGGCCTTCTATCGCTACAGCCACTACATGCTGTGGTCAGTAATGGCATGTTTGTCCCAATAAGCGGTCAAACCGCTGTAGAGCTGGCGGATATTGAACAAATCCTTAAAATCGCAACCTCTGTACCACCTCAGATGTCTTTGTCTATGCTTCCCAAAAGTCTGGGTAGTCCTCTTCAAGTGGACCCCAGACAGATTTCTTCTTTAAAACCCAAGTCCTTAATCACTCCCCGATCCAGCATGGGTGCCTCCACACCACCTCCACCTGTCATGAATGCCCAACAGGCCTCATCCGGCAACATCAGTCCTAGCCTTCCACCCCAAACAGGCCAACAAGTGAGAACTGCCAGACAGTCTTCAGCCTCATCCTCATCCTCAACTTCCTCCTCTCCCACCAATTGGGAAACTACTCAACTGGGATCTGATGTCATAGGAAACACGATTATCTCATATGAAACTGGAAAGCAGGAAGAGTTTGACAGCAAAGAGAAGGACATGAGAGTTGTCCCCAAAAAGACAGCTAAGACTGAATACCCTTGTCGGTTCTGCAAAGAAGTATTCTCTTTCTTAGGTGGCCTCCAGGCACATATGCGTCACCATTTGGGAGCATCCCCATATCAGTGCACCATTTGTAGCTACGCTGCTCCTGACAAAGCGACACTGATTCGACATCTCAGAACACACAGTGGTGAGCGGCCATACGTCTGTCGCCTCTGTCACTACCCTTTCACTGTGAAAGCCAACTGCGAGCGCCATTTGCGCAAGAAGCACATGAAGAACACACGCAAGGACATCGAGAAAAACATTGAATATGTAACCACCTCCTCGAGCATAAGCAGTGTAATTGGAGGCACCACACTAGACCTCCTTGATACAACCAACGCTGGCAACACATCTTGTCGATATTGTGGGGAGGACCTTAAGAACTACCGGGCCCTTCAGATTCACCTGCGAACTCACAATGGATGTCAAAAGAAACCATTTGAGTGCAGGCAATGTGGGGCGACATTTCTCGCTAAAAGGAACTGTATTCACCATTTGCTGAAACACCACCCAGATGTGCCAGAAAGGGAAATTGAGGAGCACATCAAAAGTCTTGTACCAGTTGGAGGTGAAGTCAATGCTCAATCCAACACTTCAGCCACAAATGGCTCCATTTCCCAGAATGTAGGTACCTTCTCTGGACCTGTTGAGGAGCAGGAACAACCTTTGGATTTCTCTAGCAAATCTCAGAAAACAATGCCTTCAGTCGTTAAAATTGAAGGAGCAGCATCTCCTCTGTTAAATGACTGTTCTATGGAGCCCATTGACCTCTCAATACCCAAGGATCCAGAGAAGAAGAAAATGAGGAAAGAAGTTCCCCAGAATTATCAAGAGCTCAATAAAGAAAAGACTTCAGAAACAGCCCCTGGACTTCTCGCAGCTATTCCGGTCTCCATTCCTAGCCTAGCCTCAGTTCTATCCAGTGACATTACTAAGCCTTATACTCGCTTAAAGCCCCTGCTACCAAAACCATCTTCTGCTTCTAGTACTGCGGAAATGGCACCACTGGCCTCTATTGCTCAGATTATCTCATCTGTTTCAGCTACCCCAGTGCTTATCGAAACAGGAATGGATGCAAAAAACTGTATTAGTGCAGTGGATTTTAAAACACTAAGTGAAAACAAGAGTCCCATAGGCACCACTAAACTGGATTCCGTGCTGAATGGGTCTCCTGATAACTCAAAGAAAAGAGGCAAGAAGAGAGTGTTTCAGGAGGAGATCTGTGATTCGAGAATAGCTGTGGGCAGTGGGATTGACCTGGAGTCAAGTGGCGAGTTTCCCAGTGTAGAGAAAATGTTGGCTACTACTGATGCAAATAAGTTCAGTCCCTACCTGCAACCCAATCAGATGGAGCCAATGATGGAGGAAAAAGAGAAGCAGTCAGCTGACGAGGAGGTGAAGGAAATACGAGAAGACAAACCAAAGAAACCTCCACAgaacaaaggaaagaaaaatgCTTATTCCAATTCAGTGCAGAAAATGACCTGCCCCTACTGCCCTCGATTGTTCCCGTGGGCCAGCTCATTGCAAAGGCATATGCTAACACACACAGGTCAGAAGCCGTACCCTTGTCCTCAGTGTGACTCGTTCTTCTCCACCAAGTCAAACTGTGAGCGACACCTGCTTCGCAAACATGGAGTCTCGAATCGGGCACTTCAAAACAGTGGATCTCGACTCAAACCTAAGACAGATGAAGAATCCTTAGGAAGCACAGGTATGATTGATTACACGGATCCAAACCAAACTCAGCCAGCTGAGGAAAATCCTGAGATGGTGgaaaaagatgatgatgatgatgatgatgattctcAAAGCAGCATGAGTCATGAAATGAGCCTTGTCAGCAATCTTGTTGTAGATGTCCAGCTTTCTGGAGAGGAGCAGCACCAGTCTAAATCAGCCCCTGAAGTGGTTTCCCCTCCAGATGAGTTCCCACACACATGTGCCTCCTGTAAGAAGACCTTTCGTCATGCAGCCACTCTGAGCCGACACCAGAAAACCCACCTTCAGGAGGTCCAGCCAGAGGATGGAGCCAAGAAGGGAAGACGCCAAGCTCCTCCACAAAATCCAATTCCAGTACCAAGTAAAGAGATGGAGCAGGACGCAAAGTCAGAAGATGATGAAAAGGAGGAGAACAGCAGCTGTGTGGAAAGTGGTGTTGATGAGGAAGAGAAGGAGAGGGAAGATATGAGTGAAGATGAAGAAGAGACTCCTTCCTCAGAGCTCCAGGAGGGCAACTCAACCAGAGGCAAAGCAGATAAGAGGAAGAAGATCTGCACCGTGTGCAGCAAACGCTTCTGGAGCCTGCAAGACTTGACTAGACACATGCGCTCACATACTGGTGAGCGACCTTATAAGTGCCAAACCTGTCATCGTACCTTCACCCTGAAGCACAGTCTGGTACGGCACCAACGCGTCCACCAGAAACCATCGGATGAAAAAGGGAAAACAGATGGAGCAAAAGATGAAGCTGGAGTGCTGGAGGAGAAAGAGTTCAATGAAGCTGTTCAGAGTGAGGCTGAACACAAAGAGGAAGAGATTGGCGGACGCATGGAGGAAGACGATGCCAAGCAGCTTCCTGAAGAAACATCCATGGGGGTGAATTCTGCCGAAGAAGCTCTGCCGGATGAGGACGAACAGGAAGAACAACAAACCGAGGAACCGTCAGAAGAGGCCCGATCAGGCTGTGACCCAGAACCTGCAAAAACCAGCAACCACAGCTGTACAGTGGCTCAGGAAGACACAGAGATGCCCGCTCAGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-273 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human RREB1 (ras responsive element binding protein 1).

Ensembl:

ensembl_id ENSDART00000156876

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033516 lncRNA upstream 271820 20725713 ~ 20776841 (+) True XLOC_015372
TCONS_00033254 lncRNA upstream 575345 20472150 ~ 20473316 (+) False XLOC_015368
TCONS_00033515 lncRNA upstream 1369332 19659710 ~ 19679329 (+) True XLOC_015363
TCONS_00033514 lncRNA upstream 1399320 19640952 ~ 19649341 (+) False XLOC_015362
TCONS_00033253 lncRNA upstream 1431872 19614953 ~ 19616789 (+) True XLOC_015359
TCONS_00030787 lncRNA downstream 29908 21090317 ~ 21124019 (+) False XLOC_015379
TCONS_00030792 lncRNA downstream 114652 21175061 ~ 21177376 (+) False XLOC_015380
TCONS_00030794 lncRNA downstream 117636 21178045 ~ 21180098 (+) True XLOC_015380
TCONS_00030796 lncRNA downstream 125516 21185925 ~ 21186788 (+) False XLOC_015381
TCONS_00030804 lncRNA downstream 296313 21356722 ~ 21368214 (+) True XLOC_015383
TCONS_00030783 mRNA upstream 15095 21000355 ~ 21033566 (+) False XLOC_015377
TCONS_00030781 mRNA upstream 72984 20967673 ~ 20975677 (+) True XLOC_015376
TCONS_00030779 mRNA upstream 91299 20925899 ~ 20957362 (+) False XLOC_015375
TCONS_00030780 mRNA upstream 91349 20926202 ~ 20957312 (+) True XLOC_015375
TCONS_00030777 mRNA upstream 168841 20866898 ~ 20879820 (+) False XLOC_015374
TCONS_00030785 mRNA downstream 3251 21063660 ~ 21076570 (+) False XLOC_015378
TCONS_00030788 mRNA downstream 29908 21090317 ~ 21143279 (+) False XLOC_015379
TCONS_00030789 mRNA downstream 29908 21090317 ~ 21156855 (+) False XLOC_015379
TCONS_00030790 mRNA downstream 67982 21128391 ~ 21143054 (+) True XLOC_015379
TCONS_00030791 mRNA downstream 114589 21174998 ~ 21182561 (+) False XLOC_015380
TCONS_00030772 other upstream 271820 20725684 ~ 20776841 (+) False XLOC_015372
TCONS_00030773 other upstream 322850 20725713 ~ 20725811 (+) False XLOC_015372
TCONS_00030771 other upstream 415134 20632221 ~ 20633527 (+) True XLOC_015371
TCONS_00030758 other upstream 1254880 19790685 ~ 19793781 (+) True XLOC_015364
TCONS_00030756 other upstream 1254891 19784959 ~ 19793770 (+) False XLOC_015364
TCONS_00030786 other downstream 7325 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030793 other downstream 115541 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030797 other downstream 125968 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030805 other downstream 315058 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030832 other downstream 1599662 22660071 ~ 22666700 (+) True XLOC_015401

Expression Profile

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