RNA id: TCONS_00030790


Basic Information

Item Value
RNA id TCONS_00030790
length 532
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_015379
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21090317 ~ 21156855 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGAACATGCCAAGCCATTTTAAGTTTAAGGAGTACTGTCCCCTAGTCTTCCGCAATCTGAGGGAGCGGTTCTCCATTGATGATCAGGAATATCAGAACTCTCTGACTCGCAGGGCCCCAATTCCCAGTGACGCTCAGGGCCGCAGTGGAGCTCGATTCCACACTTCACACAACAAGAGGTATGTCATCAAGATCATCACCAGCGAGGACGTGGCTGAGATGCACAACATCCTGAAGAAATACCACCAGTATATAGTGGAGTGCCATGGAAACACGCTGCTCCCTCAGTTTCTGGGCATGTACCGCCTCACAGTGGATGGAGATGAGACCTACATGATCGTCACTCGTAATGTTTTCAGCCACCGCCTGCCTGTTTACAAAAAATATGACTTAAAGGGATCTACAGTGGCAAGAGAAGCTAGTGACAAAGAAAAGCCACGTCCACCTGAAGAGGCTCCGTCCAAATCACGCATGAGCCAAAAGCTACAAACCATCCGGATCGCCACACGCTTTTACTGCGCCATAAGACAC

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-272 Predicted to enable ATP binding activity and phosphatidylinositol phosphate kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Orthologous to human PIP4K2A (phosphatidylinositol-5-phosphate 4-kinase type 2 alpha).

Ensembl:

ensembl_id ENSDART00000136814

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030787 lncRNA upstream 4372 21090317 ~ 21124019 (+) False XLOC_015379
TCONS_00033516 lncRNA upstream 351550 20725713 ~ 20776841 (+) True XLOC_015372
TCONS_00033254 lncRNA upstream 655075 20472150 ~ 20473316 (+) False XLOC_015368
TCONS_00033515 lncRNA upstream 1449062 19659710 ~ 19679329 (+) True XLOC_015363
TCONS_00033514 lncRNA upstream 1479050 19640952 ~ 19649341 (+) False XLOC_015362
TCONS_00030792 lncRNA downstream 32007 21175061 ~ 21177376 (+) False XLOC_015380
TCONS_00030794 lncRNA downstream 34991 21178045 ~ 21180098 (+) True XLOC_015380
TCONS_00030796 lncRNA downstream 42871 21185925 ~ 21186788 (+) False XLOC_015381
TCONS_00030804 lncRNA downstream 213668 21356722 ~ 21368214 (+) True XLOC_015383
TCONS_00033255 lncRNA downstream 288671 21431725 ~ 21436401 (+) False XLOC_015385
TCONS_00030785 mRNA upstream 51821 21063660 ~ 21076570 (+) False XLOC_015378
TCONS_00030782 mRNA upstream 66086 21000334 ~ 21062305 (+) False XLOC_015377
TCONS_00030784 mRNA upstream 67982 21048661 ~ 21060409 (+) True XLOC_015377
TCONS_00030783 mRNA upstream 94825 21000355 ~ 21033566 (+) False XLOC_015377
TCONS_00030781 mRNA upstream 152714 20967673 ~ 20975677 (+) True XLOC_015376
TCONS_00030791 mRNA downstream 31944 21174998 ~ 21182561 (+) False XLOC_015380
TCONS_00030795 mRNA downstream 42849 21185903 ~ 21191831 (+) False XLOC_015381
TCONS_00030798 mRNA downstream 86855 21229909 ~ 21300115 (+) True XLOC_015381
TCONS_00030799 mRNA downstream 166218 21309272 ~ 21321749 (+) False XLOC_015382
TCONS_00030800 mRNA downstream 169918 21312972 ~ 21320657 (+) True XLOC_015382
TCONS_00030786 other upstream 54596 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030772 other upstream 351550 20725684 ~ 20776841 (+) False XLOC_015372
TCONS_00030773 other upstream 402580 20725713 ~ 20725811 (+) False XLOC_015372
TCONS_00030771 other upstream 494864 20632221 ~ 20633527 (+) True XLOC_015371
TCONS_00030758 other upstream 1334610 19790685 ~ 19793781 (+) True XLOC_015364
TCONS_00030793 other downstream 32896 21175950 ~ 21177665 (+) False XLOC_015380
TCONS_00030797 other downstream 43323 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030805 other downstream 232413 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030832 other downstream 1517017 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030841 other downstream 1843228 22986282 ~ 22991521 (+) True XLOC_015408

Expression Profile

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