RNA id: TU404066


Basic Information

Item Value
RNA id TU404066
length 447
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G356224
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46063213 ~ 46081563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagcacatgggttaaacatatctcagaacagcacatgagttaaacatgtctcagaacagcacatggcttaaacatgtctcagaacagcacatgggttaaacatgtatCAGAACAGCACGTGCGTTAAACGTGTTTCAGAACAGCacgtgggttaaacatgtctcagaacagcacatgggttaaacatgtctcagagcagcacatgtgttaaacatgtctcagaacagcacatgggttaaacatgtctcagaacagcacatgggttaaacatgtctcagaacagcacatgggttaaacatgtctcagaacagcacatgggttaaacatgtctcagaacagcacatgggttaaacatgtctcataaCAGCATGTGGAtacaacatgtctcagaacagcacatggtttaaacatgtctcagaacagcacatgggttaaacatgtctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404058 lncRNA upstream 1804 46057675 ~ 46061409 (+) True G356221
TU404056 lncRNA upstream 3177 46056796 ~ 46060036 (+) True G356219
TU404057 lncRNA upstream 4618 46057182 ~ 46058595 (+) True G356220
TU404039 lncRNA upstream 44909 46017584 ~ 46018304 (+) True G356202
TU403970 lncRNA upstream 130704 45932179 ~ 45932509 (+) True G356138
TU404083 lncRNA downstream 14262 46095825 ~ 46103709 (+) False G356232
TU404084 lncRNA downstream 14262 46095825 ~ 46103709 (+) True G356232
TU404144 lncRNA downstream 101508 46183071 ~ 46183673 (+) True G356290
TU404146 lncRNA downstream 102299 46183862 ~ 46245897 (+) True G356291
TU404484 lncRNA downstream 284663 46366226 ~ 46388253 (+) False G356586
XM_036976447.1 mRNA upstream 310260 45733642 ~ 45752953 (+) False LOC110510408
XM_036976457.1 mRNA downstream 465184 46546747 ~ 46574726 (+) False LOC110521126
XM_036976455.1 mRNA downstream 465184 46546747 ~ 46575079 (+) False LOC110521126
XM_036976456.1 mRNA downstream 465184 46546747 ~ 46575079 (+) True LOC110521126
XM_036976458.1 mRNA downstream 493610 46575173 ~ 46607805 (+) False mapre3b
XM_036976459.1 mRNA downstream 493610 46575173 ~ 46607805 (+) False mapre3b
TU403800 other upstream 310273 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other upstream 310273 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other upstream 310273 45733669 ~ 45752940 (+) True LOC110510408
TU403416 other upstream 364366 45689435 ~ 45698847 (+) True G355763
TU403390 other upstream 439209 45620266 ~ 45624004 (+) False G355753
TU404485 other downstream 284663 46366226 ~ 46373781 (+) True G356586
TU404630 other downstream 489992 46571555 ~ 46572865 (+) True G356693
TU404621 other downstream 539238 46620801 ~ 46623956 (+) False G356688
TU404623 other downstream 539238 46620801 ~ 46625417 (+) False G356688
TU404676 other downstream 569522 46651085 ~ 46651564 (+) True G356728

Expression Profile