RNA id: TCONS_00030793


Basic Information

Item Value
RNA id TCONS_00030793
length 617
RNA type processed_transcript
GC content 0.42
exon number 7
gene id XLOC_015380
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 21174998 ~ 21182561 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCATCCTGTAACAGTATAAACAGCTGGATGCATCCTCTTCTGAGATCAGGAAGGCATATAGAAAGCTTTCTCTTATTTTGCACCCTGATAAAAACAAAGATGAAAATGCAGAAAACCAGTTTCGACAGTTAGTTGCCATCTATGAAGTTCTCAAGGACGAGGAAAGAAGGCAAAGATATGATGACATCTTGGTTAATGGGCTGCCAGATTGGAGACAGCCTGTCTTCTACTACCGACGTGTTAGGAAGATGAGCAATGGAGAGTTGggcttcctcctcttcctcatcctGACCGTGGGTCACTATGCGGTTATATGGTCCATCTACCTTGAAAAGCAGTTAGATGAACTTCTGAGCAGGAAGAAGAGGGAGAAGAAAAAGAAGCAAACCAGCAAAATGACAGATGAGATGAAGCCTTTGGCTCAGGACAAAAATGAGAGatctgACAGGCCACACTGGCATGACATTTTACCTCTCAAATTAAGCATCTGGTTGTATTATTCAATAAAGTCTCTCCCTCATATCATACAGGATGTGAAGCAGTATTATAAAGATTATAAGGAAATGAAAGTAAAGGAGAAGGAAGAGGCAGAAGCTCTGGCAGAACAGGAAATGC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-061103-529 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1).

Ensembl:

ensembl_id ENSDART00000123008

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030787 lncRNA upstream 51931 21090317 ~ 21124019 (+) False XLOC_015379
TCONS_00033516 lncRNA upstream 399109 20725713 ~ 20776841 (+) True XLOC_015372
TCONS_00033254 lncRNA upstream 702634 20472150 ~ 20473316 (+) False XLOC_015368
TCONS_00033515 lncRNA upstream 1496621 19659710 ~ 19679329 (+) True XLOC_015363
TCONS_00033514 lncRNA upstream 1526609 19640952 ~ 19649341 (+) False XLOC_015362
TCONS_00030794 lncRNA downstream 380 21178045 ~ 21180098 (+) True XLOC_015380
TCONS_00030796 lncRNA downstream 8260 21185925 ~ 21186788 (+) False XLOC_015381
TCONS_00030804 lncRNA downstream 179057 21356722 ~ 21368214 (+) True XLOC_015383
TCONS_00033255 lncRNA downstream 254060 21431725 ~ 21436401 (+) False XLOC_015385
TCONS_00033256 lncRNA downstream 254220 21431885 ~ 21436401 (+) False XLOC_015385
TCONS_00030789 mRNA upstream 19095 21090317 ~ 21156855 (+) False XLOC_015379
TCONS_00030788 mRNA upstream 32671 21090317 ~ 21143279 (+) False XLOC_015379
TCONS_00030790 mRNA upstream 32896 21128391 ~ 21143054 (+) True XLOC_015379
TCONS_00030785 mRNA upstream 99380 21063660 ~ 21076570 (+) False XLOC_015378
TCONS_00030782 mRNA upstream 113645 21000334 ~ 21062305 (+) False XLOC_015377
TCONS_00030795 mRNA downstream 8238 21185903 ~ 21191831 (+) False XLOC_015381
TCONS_00030798 mRNA downstream 52244 21229909 ~ 21300115 (+) True XLOC_015381
TCONS_00030799 mRNA downstream 131607 21309272 ~ 21321749 (+) False XLOC_015382
TCONS_00030800 mRNA downstream 135307 21312972 ~ 21320657 (+) True XLOC_015382
TCONS_00030801 mRNA downstream 178577 21356242 ~ 21371233 (+) False XLOC_015383
TCONS_00030786 other upstream 102155 21067734 ~ 21073795 (+) True XLOC_015378
TCONS_00030772 other upstream 399109 20725684 ~ 20776841 (+) False XLOC_015372
TCONS_00030773 other upstream 450139 20725713 ~ 20725811 (+) False XLOC_015372
TCONS_00030771 other upstream 542423 20632221 ~ 20633527 (+) True XLOC_015371
TCONS_00030758 other upstream 1382169 19790685 ~ 19793781 (+) True XLOC_015364
TCONS_00030797 other downstream 8712 21186377 ~ 21243018 (+) False XLOC_015381
TCONS_00030805 other downstream 197802 21375467 ~ 21375594 (+) True XLOC_015384
TCONS_00030832 other downstream 1482406 22660071 ~ 22666700 (+) True XLOC_015401
TCONS_00030841 other downstream 1808617 22986282 ~ 22991521 (+) True XLOC_015408
TCONS_00030855 other downstream 2080112 23257777 ~ 23257897 (+) True XLOC_015416

Expression Profile

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