RNA id: TU404484


Basic Information

Item Value
RNA id TU404484
length 2210
lncRNA type antisense_over
GC content 0.50
exon number 16
gene id G356586
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46366226 ~ 46388253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAGTTCTATTTTTTAATTAAATCCTTGTAGTAACACATTAATTTGTAAGAAAACAAAAAGGCAGAGTATAAACATATCATATTGATCGGATCAGGGTGCATGTCAAGAGTCTAATGGCTTCTCCTCCATCTGCCCTGATAAGAACACAGCTGATGGCATCACGGTAGACAACTACCGACTAAGAATTTCCTTTTATGAGAGGAAATGAGGAGGCCACAGACTATGGAGAAAggcccactgttactgtctgtgtGAATGCTACTGCAGCGTTGCACCCTAACAGCAAGGCAACCTAAAACTCTGCTATAATTTACACCCTCTcctccacacaaacacatgccCTAACCCAACCAGGCAAAATGGTGTTAGTATGTACAGTCTGATAATGTGGGTGTTACTCCACTCTGTGTGTATATGCGTACACAGTCTTCTCCTGCATCATCTCAGTCCTCCCAGAATCCTGTTCTACTGGGGGTATGCTTCGATCACCATTGCAtgtccctgtccTCCCGCAGCGCATGCAGCCACCAGTCCATACTGGCCCCCCTCCTTCAGCAGGCGGTGTGCTACCGTGGTTACCAGACGGCAGCCGGTGGCTCCAAACGGATGACCAAGAGACAGACTGCCCCCCCACAGGTTAAACTTCTCCATGGCAGGGGCCCCCACCTTAGCCTTCCGTCCCATGTAGGTCTGTGCAAACCAGTCTGAATCCAACGCTTTCAGGTTAGCCATGATCTGGCCAGCAAAGGCCTCATGGAACTCGAAGACATCAATGTCATCCATAGTCAACCCTGCACGTGCCAGAACTTTCGGGGTTCCATATGCTGGCCCAAGCAGCAGCTGGTCTTTGGGGTCCTGAGACACGAACACAAAGTCTCTGAGGTAGGCTTTGGGCTTGTATCCCATGGCCAGGGCTTTCTCTTCTGACATGATGAGGACAGCTGATGCACCATCGGTCAGAAAGGAAGAgttagcagcagtaacagtgccATGAGGTTTGATAAAGGCAGGTTTCAGTTTGGCCAGTTGTTCCATGGAGGATGGACGGATCCCGTTGTCCTTGGCGACCGTGTCacgaCTGGCACCTTGAAGCTGATGACGTCACTGAGGAGTCCTGCATCCTGAGCCTGTTTGGCTAGTGTGTGTGATCGTAGAGCGAACTCATCCTGCTCCAGCCGAGTCACTCCAAACGCTGCAGCAAGACGGTCTGCACTGTGACCCATCGTCTCTGCCGTGGAGAACTCTGCTACAGCAGGCAGcttcAGGTGTGAGATGAGCCATCCTGATAGAGCCTATAAGGCTGAGGCGTTGTCCGAGGGTCTTCGCTCTGTTCAGAGCCAACATGGTCTTCCTCATCTTCCTGCTGTGACGAATAGGAACGTCCGACATAAACTCCACCCCTCCAGCTACTATAGTATCACACTGGCCTGCTGTGATCAGCCCCacaccTGTCATAGCGACGTTGGAGGAGATGCAGGCCATGGTGACGGTGTGAGATGGGATCTTATCAGAGAAGCCTGCTCCCAACGAAGCctctaGCCACGTTGCTGGTCTTCACCTCCTGGATGACGGTTCCATAGATTAtgtaatctactgcatctttaggGAGACTGGTTTTATGCAGCAGACCCTGTAGAGCTGCTCTGGCAAGGTCATGGGGCATCAGATCAGCATATGTGGTTCCTGAGAGAAGGAACGGTGTTCTGACTCCTTCCACCAGAACTATGTTCTTCACTCCAGGTTTGGCCAATGTCTTCTTACTCTTAGTCTGGACCTGGGCATGGAGCTGGACGGATGTACTGAGGGAGCGGGTCGcatacTGCACAGCCCAGGCAGGGTTGACTGGAGGACAGCACCGTAGAGAGTTCATCAACATGGACGCCATTTTATCTTATATCTGTCTCCCGGCAAAGCTCTCCTGTCGGTGTCTCTCTCCGGCGTCTGTGTCTGAATCAGATGCGGACTATCAAACCGCCTGTGTTCTCAGGACCCGTAAAGGGGTTTGGTTGTCCTAAGAGATGCCCAATTTAAAGCGTAAAAAAACTCATGAGGTATGAAACCTATTTTTACCTTTCACTGGAGATAATATCGTCAAAATCTAACTTAAGatttacaaaaaatgtttttacttttGACTAATTCAACGATGAATATATGAACATTTTCTTAACGGCGCTCTTTCGACTCTTCTCTGAGTTGTAAACGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404146 lncRNA upstream 120329 46183862 ~ 46245897 (+) True G356291
TU404144 lncRNA upstream 182553 46183071 ~ 46183673 (+) True G356290
TU404083 lncRNA upstream 262517 46095825 ~ 46103709 (+) False G356232
TU404084 lncRNA upstream 262517 46095825 ~ 46103709 (+) True G356232
TU404066 lncRNA upstream 284663 46063213 ~ 46081563 (+) True G356224
TU404487 lncRNA downstream 6280 46394533 ~ 46395171 (+) True G356588
TU404488 lncRNA downstream 8316 46396569 ~ 46400606 (+) True G356589
TU404517 lncRNA downstream 27437 46415690 ~ 46416007 (+) True G356617
TU404532 lncRNA downstream 44728 46432981 ~ 46433363 (+) True G356628
TU404522 lncRNA downstream 85342 46473595 ~ 46476951 (+) False G356621
XM_036976447.1 mRNA upstream 613273 45733642 ~ 45752953 (+) False LOC110510408
XM_036976457.1 mRNA downstream 158494 46546747 ~ 46574726 (+) False LOC110521126
XM_036976455.1 mRNA downstream 158494 46546747 ~ 46575079 (+) False LOC110521126
XM_036976456.1 mRNA downstream 158494 46546747 ~ 46575079 (+) True LOC110521126
XM_036976458.1 mRNA downstream 186920 46575173 ~ 46607805 (+) False mapre3b
XM_036976459.1 mRNA downstream 186920 46575173 ~ 46607805 (+) False mapre3b
TU403800 other upstream 613286 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other upstream 613286 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other upstream 613286 45733669 ~ 45752940 (+) True LOC110510408
TU403416 other upstream 667379 45689435 ~ 45698847 (+) True G355763
TU403390 other upstream 742222 45620266 ~ 45624004 (+) False G355753
TU404630 other downstream 183302 46571555 ~ 46572865 (+) True G356693
TU404621 other downstream 232548 46620801 ~ 46623956 (+) False G356688
TU404623 other downstream 232548 46620801 ~ 46625417 (+) False G356688
TU404676 other downstream 262832 46651085 ~ 46651564 (+) True G356728
TU404763 other downstream 396027 46784280 ~ 46784753 (+) True G356789

Expression Profile