RNA id: TU404640


Basic Information

Item Value
RNA id TU404640
length 226
lncRNA type intronic
GC content 0.52
exon number 2
gene id G356702
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46591955 ~ 46592330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGAActcgtgtttgataccattctatCCCAGCCATTACCACTAGTCTGTCCTCCTCCATTCTACCCCAGCCATTACCACTAGTCTGTCCTCCTCCATTCTACCCCAGCCATTACCACTAGTCTGTCCTCCTCCAATCTACCCCAGCCATCACCACTAGTCTGTCCTCCTCCATTCTACCCCAGCCATTACAGCTAGTCTGTCCTCCTCCATTCTACCCCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404522 lncRNA upstream 115004 46473595 ~ 46476951 (+) False G356621
TU404524 lncRNA upstream 115004 46473595 ~ 46476951 (+) True G356621
TU404532 lncRNA upstream 158592 46432981 ~ 46433363 (+) True G356628
TU404517 lncRNA upstream 175948 46415690 ~ 46416007 (+) True G356617
TU404488 lncRNA upstream 191349 46396569 ~ 46400606 (+) True G356589
TU404579 lncRNA downstream 13670 46606000 ~ 46607810 (+) True mapre3b
TU404624 lncRNA downstream 28471 46620801 ~ 46625417 (+) False G356688
TU404620 lncRNA downstream 32460 46624790 ~ 46625417 (+) True G356688
TU404660 lncRNA downstream 40536 46632866 ~ 46633586 (+) True G356713
TU404671 lncRNA downstream 53187 46645517 ~ 46647811 (+) False G356723
XM_036976455.1 mRNA upstream 16876 46546747 ~ 46575079 (+) False LOC110521126
XM_036976456.1 mRNA upstream 16876 46546747 ~ 46575079 (+) True LOC110521126
XM_036976457.1 mRNA upstream 17229 46546747 ~ 46574726 (+) False LOC110521126
XM_036976447.1 mRNA upstream 839002 45733642 ~ 45752953 (+) False LOC110510408
XM_036976469.1 mRNA downstream 102558 46694888 ~ 46745623 (+) False agbl5
XM_036976468.1 mRNA downstream 102558 46694888 ~ 46745644 (+) False agbl5
XM_036976470.1 mRNA downstream 102558 46694888 ~ 46745644 (+) False agbl5
XM_036976467.1 mRNA downstream 102569 46694899 ~ 46745644 (+) False agbl5
XM_036976466.1 mRNA downstream 102583 46694913 ~ 46745644 (+) True agbl5
TU404630 other upstream 19090 46571555 ~ 46572865 (+) True G356693
TU404485 other upstream 218174 46366226 ~ 46373781 (+) True G356586
TU403800 other upstream 839015 45733669 ~ 45752940 (+) False LOC110510408
TU403802 other upstream 839015 45733669 ~ 45752940 (+) False LOC110510408
TU403805 other upstream 839015 45733669 ~ 45752940 (+) True LOC110510408
TU404621 other downstream 28471 46620801 ~ 46623956 (+) False G356688
TU404623 other downstream 28471 46620801 ~ 46625417 (+) False G356688
TU404676 other downstream 58755 46651085 ~ 46651564 (+) True G356728
TU404763 other downstream 191950 46784280 ~ 46784753 (+) True G356789

Expression Profile