RNA id: TU404660


Basic Information

Item Value
RNA id TU404660
length 283
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G356713
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46632866 ~ 46633586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgatgtgtgtgtgggtggtgtgtgtgtgtgttacctgtgaagGAACCACGGGATCGGATGTCGTGTGTAATGAACCCGGCAGCAAACACCAGTAAAGCCATAAAGAGTCTGGACCAGGGGAAACCTCGTCCTGACATCTTCAACTGGAGACACtacagacaggagaggacagacaggagagagaagaggcaggagagaggacaggcaggagaggagggggtagggggaAGCGAGGTAGGGAGGGGTGTAGGGGGAAGCGAGgtagggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404624 lncRNA upstream 7449 46620801 ~ 46625417 (+) False G356688
TU404620 lncRNA upstream 7449 46624790 ~ 46625417 (+) True G356688
TU404579 lncRNA upstream 25056 46606000 ~ 46607810 (+) True mapre3b
TU404640 lncRNA upstream 40536 46591955 ~ 46592330 (+) True G356702
TU404522 lncRNA upstream 155915 46473595 ~ 46476951 (+) False G356621
TU404671 lncRNA downstream 11931 46645517 ~ 46647811 (+) False G356723
TU404670 lncRNA downstream 12650 46646236 ~ 46647811 (+) True G356723
TU404683 lncRNA downstream 30722 46664308 ~ 46738996 (+) True G356733
TU404724 lncRNA downstream 116536 46750122 ~ 46755469 (+) True G356754
TU404769 lncRNA downstream 168454 46802040 ~ 46802750 (+) True G356795
XM_036976459.1 mRNA upstream 25061 46575173 ~ 46607805 (+) False mapre3b
XM_036976469.1 mRNA downstream 61302 46694888 ~ 46745623 (+) False agbl5
XM_036976468.1 mRNA downstream 61302 46694888 ~ 46745644 (+) False agbl5
XM_036976470.1 mRNA downstream 61302 46694888 ~ 46745644 (+) False agbl5
XM_036976467.1 mRNA downstream 61313 46694899 ~ 46745644 (+) False agbl5
XM_036976466.1 mRNA downstream 61327 46694913 ~ 46745644 (+) True agbl5
TU404623 other upstream 7449 46620801 ~ 46625417 (+) False G356688
TU404621 other upstream 8910 46620801 ~ 46623956 (+) False G356688
TU404630 other upstream 60001 46571555 ~ 46572865 (+) True G356693
TU404485 other upstream 259085 46366226 ~ 46373781 (+) True G356586
TU403802 other upstream 879926 45733669 ~ 45752940 (+) False LOC110510408
TU404676 other downstream 17499 46651085 ~ 46651564 (+) True G356728
TU404763 other downstream 150694 46784280 ~ 46784753 (+) True G356789

Expression Profile