RNA id: TU404676


Basic Information

Item Value
RNA id TU404676
length 438
RNA type TUCP
GC content 0.44
exon number 2
gene id G356728
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46651085 ~ 46651564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagtagtactgttGTACCTGTATCCATGGTTCCCCAATACAACAGCAGTAGTGTTGTACCTGTATCCATGGTTCCCCAATACAACAGATTGGGGAACCATGGATACAGGTACAACACTACTTATGTTGTATAGGGGAACCATGGATACAGGTACAACACTACTTATGTTGTATAGGGGAACCATGGATACAGGTACAACACTACTGCTGTTGTATTGGGGAACCATGGATACAGGTACAACAGTACTACTGCTGTTGTATTGGGGAACCATGGATACAGGTacaacacctactactactactgttgtatTGGGGAACCATGGATACAGGTACAACACTACTGATGTTGTATTGGGGAACCTTGGATACAGGTACAacacctactactactgttgcaGTAGTGTTGTACCTGTATCCATGGTTCCCCAATACAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404671 lncRNA upstream 3274 46645517 ~ 46647811 (+) False G356723
TU404670 lncRNA upstream 3274 46646236 ~ 46647811 (+) True G356723
TU404660 lncRNA upstream 17499 46632866 ~ 46633586 (+) True G356713
TU404624 lncRNA upstream 25668 46620801 ~ 46625417 (+) False G356688
TU404620 lncRNA upstream 25668 46624790 ~ 46625417 (+) True G356688
TU404683 lncRNA downstream 12744 46664308 ~ 46738996 (+) True G356733
TU404724 lncRNA downstream 98558 46750122 ~ 46755469 (+) True G356754
TU404769 lncRNA downstream 150476 46802040 ~ 46802750 (+) True G356795
XM_036976459.1 mRNA upstream 43280 46575173 ~ 46607805 (+) False mapre3b
XM_036976469.1 mRNA downstream 43324 46694888 ~ 46745623 (+) False agbl5
XM_036976468.1 mRNA downstream 43324 46694888 ~ 46745644 (+) False agbl5
XM_036976470.1 mRNA downstream 43324 46694888 ~ 46745644 (+) False agbl5
XM_036976467.1 mRNA downstream 43335 46694899 ~ 46745644 (+) False agbl5
XM_036976466.1 mRNA downstream 43349 46694913 ~ 46745644 (+) True agbl5
TU404623 other upstream 25668 46620801 ~ 46625417 (+) False G356688
TU404621 other upstream 27129 46620801 ~ 46623956 (+) False G356688
TU404630 other upstream 78220 46571555 ~ 46572865 (+) True G356693
TU404485 other upstream 277304 46366226 ~ 46373781 (+) True G356586
TU403800 other upstream 898145 45733669 ~ 45752940 (+) False LOC110510408
TU404763 other downstream 132716 46784280 ~ 46784753 (+) True G356789

Expression Profile