RNA id: TU404724


Basic Information

Item Value
RNA id TU404724
length 5272
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G356754
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 46750122 ~ 46755469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagtgtatgaTGCATGGCGCGATGAGACCGAGGCTTTCTGCCAGACCACACACTCAAACAGctattatgagcccctcctttatagtagaatcatacaaccagaatctaaagacggtgacatcttgtggaagccctagtcctgtttggatttcttctcaggattttgcctgccatatgagttctgttttaCACAGacttctgagtgttttctatccaccagtaataataatatgcatatattcccatctgggaaagagtaggaggcagtttactctgggcacgccttttatccaaaagtgaaaatgctgccccctagccccaacaggttttaactccagaatcttcacaggtcctttgctgttgttctgggattgatttgcatttttctcaccaaagtacgttcatctctagaagacagaacacgtctcctccctgagcggtatgacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagttgaacgtggtaccttcttggctgatttctttggattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggcctggaaatacatccacaggtacacctccaattaactcaaatgatgtcaattagcctatcagaatcttctaaagccatgacatcattttctggaattttccaaatgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattacaagtgaaataatctgtctgtaaactatttttggaaaaactacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagaaatggtGTGGGGggattgaaaaacgagttttaatgactccaacctaagtgtatgtaaatttccgacttcaactgtagatggaaaatagctgtccttgaaacagtcttgatatgttcgtcaaaagagagatcagggtaacACTGAGGACCtgcacagttttatttgagacgactgtacaaccatcaagattaattgtcagatccaacagaagatctctttgtttcttgggacctagaaatagcatctctgttttgtccaagtttaaaagtagaacatttgctgCTCTCCACTTCCTTatatctgaaacacaggcttccagggagggcaattttggggcttcaccatgtttcaacaaaatatacagctgtgtgtcgtccgcatagcagtgaaagttaacattatgtttccgaatgacatcaccaagaggtaaaatatatagtgaaaatcatagtggtcctaaaacgaaaccttgaggaacaccgaaacttacagttgatttgtcagaggacaaaccacgcacagagacaaactgatatctttccgacagacaAGACCTAAACCAggtcagaacttgtccgtgtagaccaatttgggtttccaatctctctaaaagaatgtggtgatccaTGGTATTAAATGCAGCACTAAagaggagcacgaggacagatgcagagcctcggtctgatgccattaaaaggtaatctaccaccttcacaagtgcagtctcagtgctatgatgggctctaaaaccagactgaagcatttcggaTACATTgttttgtcttcaggaaggcagtgagttactgcgcaacagctttttctaaaaaattttgtgaggaatgggagattcgatataggctgatagtttttatattttctgagTCAATGTTTGGCTTTTTTAAGAgaagctttattactgccacttttagtgagtttggtacacatccggtggacagagagccgtttattatgttcaacatatgagggccaagcacaggaagcagctctgtATCTGTGttcttcgtagctgtttacataccaccagaGTCAGAGGTTGGCACAGACAGCATTGAATGaactgtattccgccataagcaaacaccCGGAGGCGGCGCTCCTGGTAgcctgggactttaatgcagggaaacttaaatcccttttaccacatttccatcagcatgttaaatgtgcaaccagagggaaaataaatctggaccacctgtactccacacacagagaagcatatcaagctctccctcaccctccattttacaaatctgaccataattccattgtcctgattcctgcttacaagcacaaattaaagcaggaagcaccagtgactagatcagtaaaaaagtggtcagatgaagcagatgctaagctacaggactgatTTGCAGCACCGACTGGAATATGTcctgggattcctccaatggcattgaggagtatagcACATCAGTCATTCTATACTTCTGTATACGTCTgacccctctttggacactgtgttaactaacctccagatgagcttcaatgccatacaactctccttccatggcctccaactgctcttaaatgctagtaaaactaaatgcatgatcttcaaccgatccctgcccacacctgcccgcccgtccagcatcactactctggacggctctgacttagaatacgtggacaactacaaatacctaggtgtctggttagactgtaaacactccttccagactcacattattatctccaatccaaagttaaatctagaatcggcttcatatttcgcaaaaaagcctccttcactcatgctactaaacataccctcgtaaaactgactatcctaccgatcctagcctccaacactctactcagcaaattggatgcagtctatcacagtgccatccgttttgtcaccaaagccccatatattacccaccactgtgacctgtatgctctcattggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctataagtcatcTATAaataaagctccgccttatctcagctcactggtcaccatagcaacacccacccgtagcacgcgctccagcaggtatatttcactggtcatccccagaACCAActcctctttggccgcctttccttccagttctctgctgccaatgactggaacgaattcaaaaatcactgaagctggagacttaaatCTCCCTTACTAACTTTAATCATCAGCTGTTAGAgaagcttacagatcactgcacctgtacacagcccatctgtaaatagcccaaccaactacctcatccccatattgtcatgtatttattcatgctcttttgcaccccagtctctctacttgcacatcatcatctgcacatctatcactccagtgttaatgctgaATTGTAAtcatttcgccactatggcctatttattgccttacctccctaatcttactacatttgcactcactgtatatatagttttattttgtgttattgtctCTAcgcttgtttgttccatgtgAAACTCTTTGTTggtgtttttgtcgcactgctttgctttatcttggccaggtcgcagatgtaaatgagaacttgttctcaactggcctacctggttaaataaaggttaaataaaaaaaaagaccgagcactcccccattctcatcgacggggctatagtggagcagtttgagagcttcaagctccctggtgtccacatcaccaacaaactatcatggtccaagcacaccaagacagtcatgaagcgggcacaacaaaacctatttccccctcaggagactgaaaagatttgccatgggtccacagatcctgaaaaggttttacagctgcaccatcgagagcatggttgcatcactacctggtgtggcaactgctcggcctccaaccgcaaggcactacagagtgtaatgcgaacagcccagtaaataccaggcggtgtcagaggaacgccctaaaaattgtcaaagactccagccaccccagtcatagactgttctctctgctgccgcacggcaagtgggaccggagtgccaagtctaggtccaagaggcttctaaacagcttctacacccaagccataagactcctgaagtCTAGTTAAATGGCtgcccagactattcacattgctgcatattcagcatttcactgtgaggtctactacacctgttgtattcggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctacctacacctgttctattcagcatttcactgtgaggtctgctacACCCGtcttattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctgctacacctgtcttattcagcatttcactgtaaggtctactacacctgttgtattcggcgaatgtgactaagacatacagtatatactcCCAGTCCGATGCTGAAAAAcgtcctcacagcatgatgctgccaccaacatgcttcaccgtagggaaggtgccaggtttcctccacacgcaacgcttggcattcaggccaaagagttcaatcttggtttcatcggaccagagaatcttatttctcatggtctgagagtcttaaggtgctttttggcaaattccaagcgggctttcatgtgccttttaccgaggagtggcttccatctgcccactctaccataaaggcctgattggcggagtgctgcagagatggttgtccttctggaaggttctcccatctccacagaggaactctgtcagagtgaccattgggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggccgggtggccagctctaggaagagtcttcatGGTTCtaaacgatggaggccactgtgttcttggggaccttcaatgctgcagaaatgttttggtacccttccccagatctgtgcctcgacacaatcctgtctctgagctctacggacaattccttcgaccttatggcttggtttttgctctgacatgcgctgtcaactgtgggacattatatagacaggtgtgtgtctttccaaatcctgtccaatcaattgaatttaccacaggcggactccaagttgtagaaacatcaaggatgatcaatggaaacagcatgcaccttagctcaattttgagtctcatagcaaagggtctgaatacttatgcaaataaaaagtaatacatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404683 lncRNA upstream 11126 46664308 ~ 46738996 (+) True G356733
TU404671 lncRNA upstream 102311 46645517 ~ 46647811 (+) False G356723
TU404670 lncRNA upstream 102311 46646236 ~ 46647811 (+) True G356723
TU404660 lncRNA upstream 116536 46632866 ~ 46633586 (+) True G356713
TU404624 lncRNA upstream 124705 46620801 ~ 46625417 (+) False G356688
TU404769 lncRNA downstream 46571 46802040 ~ 46802750 (+) True G356795
XM_036976468.1 mRNA upstream 4478 46694888 ~ 46745644 (+) False agbl5
XM_036976470.1 mRNA upstream 4478 46694888 ~ 46745644 (+) False agbl5
XM_036976467.1 mRNA upstream 4478 46694899 ~ 46745644 (+) False agbl5
XM_036976466.1 mRNA upstream 4478 46694913 ~ 46745644 (+) True agbl5
XM_036976469.1 mRNA upstream 4499 46694888 ~ 46745623 (+) False agbl5
TU404676 other upstream 98558 46651085 ~ 46651564 (+) True G356728
TU404623 other upstream 124705 46620801 ~ 46625417 (+) False G356688
TU404621 other upstream 126166 46620801 ~ 46623956 (+) False G356688
TU404630 other upstream 177257 46571555 ~ 46572865 (+) True G356693
TU404485 other upstream 376341 46366226 ~ 46373781 (+) True G356586
TU404763 other downstream 28811 46784280 ~ 46784753 (+) True G356789

Expression Profile