RNA id: XM_036976563.1


Basic Information

Item Value
RNA id XM_036976563.1
length 2544
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110524924
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 482425 ~ 599279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTAATTTCTATCCAAACTGTGTGCGCGGTGATGGCGCGCTAAGGCGCAGAGTGGTGTACATGGATGTGCGTTCGTTGTTGGAAGTgacaaaggtgtgtgtgtctatgttggAGCTGCCTGAGAGGAGAGGCCATTTTGTACagcgaggcaggcaggcaggcaaggcgtctgtacatgtctgtctgtgtattttCACGTCAGTTTAACAGGAAGCGTGCCATTGTGCGTATGAGAGCGAACATTTCAGTGTTGGAGGGGCGCGAGCTAGCTGAGCAGTAGTAACAACACCCAAACCGATTTCTTCACTTTCCTGAGCGTTCACTGTCCTTTCTACACTGTTTCCTCTGTGCAATGGATGGGGATTTGTTCTGCCTCTCTCTTCTGCTGTCCTGTGCGGCCGTACTACCATGAGCACTTCTACTCCATCCACAGcTAATGGCAACGATAGCAGACAGTTTAAAGGAGACCGTTCTCCCTGTGGTCCTTCCCGAGTCCTCCACGTCCGCAAGGTTCCCATCGAGGTGTCTGAGGCTGAGCTCATCTCTCTAGGAGTCCCCTTCGGTAGAGTCACCAACCTGTTGATGCTGAAAGGGAAAAACCAGGCTTTTATAGAAATGGCTTCTGAAGAGGCAGCGATCACCATGGTGAACTACTACACCACAGCAACACCTCACGTACGCAACCAGCCAGTCTACATCCAGTACTCCAACCACCGCGAGCTCAAGACAGACAACCTGCCCAATCAGGGGAGAGCTCAGGCAGCGTTGCAGGCGGTCAATGCAGTGCATTCTGGGAACATGGCGATGGGCGGTTCAGCATCGGGCAGTGATGGAGCCTTGATGCCGGGACAGAGCCCCGTGCTGCGCATCATTGTAGAAAACCTCTTCTACCCTGTATCACTGGAGGTCCTACACCAgATCTTCTCTAAGTTCGGGACGGTCCTGAAGATCATCACTTTCACCAAGAACAACCAGTTCCAGGCCCTGCTACAATATGCTGAACCGATGAATGCCCACCACGCCAAAGTGacttTGGATGGCCAGAACATCTATAACGCGTGCTGCACTCTGCGTGTGGAGTTCTCCAAGCTGACCAGCCTGAATGTGAAGTACAACAACGACAAGAGCCGAGACTTCACCCGCCTGGACCTTCCCTCCGGAGACGGACAGCCCACCATGGACCCTGGTATGACCGCCGCCTTCGGTGCTCCAGGTATCATCTCTTCGCCTTATGCTGGGGCAGCAGGTTTTTGCCCCACAATCGGATTCTCCCAAGCAGGTCTGTCCATGCACACGATGGCAGGAATGGGACCCCTCGTCTCGGGACGGATGACTCTGCACGGCATGGCGCCCACCGCCGTTCACTCTGTTCTCCTTGTCTCCAACCTCAACCCCGATAGCATATCACCACACGAACTGTTCATCCTATTTGgggtGTATGGTGATGTGCATCGGGTCAAGATTCTGTTCAACAAGAAAGAGAATGCCTTAATCCAGATGGCCGACGCTACTCAGGCACAGCTTGCAATGTCCCACCTGAACGGCCAGCGGCTGCACGGCAAGGTGATCAGAGTGACCGTCTCTAAGCACCAGACGGTCCAGCTGCCCAGGGAGGGACAGGAAGACCAGGGCCTCACTAAAGACTTCAGCGGCTCCCCGCTACACCGCTTCAAGAAGCCTGGATCCAAGAACTTTCAGAACATCTTCCCTCCCTCTGCCACCCTCCATCTATCCAACATCCCCCCGTCTGTAACAGAGGACATCCTAAAGGACCTTTTCTCTGGACCTGGATACACAGTCAAGGCCTTCAAGTTCTTCCAgAAAGACCGGAAGATGGCTTTGATCCAGTTGGGTTCAGTGGAGGAGGCCATCCAGGCCCTGATCGACCTCCACAACCACGACCTGGGAGAGAACCATCACCTCCGCGTGTCCTTCTCCAAGAGCACCATCTGACCcgcctgaaccccccccccccccccccccccccccccccccccccccctaaggccCCACTCCTGGGCTGGGCTAGCAGGAGTGAGGGACAGAATGACCCACTTTGACTTAAAAACAACAGACAATTGACTAGTTTAGATGATATTGTTGAGTAATAGACTACTGTAATGCAAGGCCTTCAGATAGAGACAGAGCTGGTCTGGAAGGAGTGATGGTTGATTTATTCAGGGCAGGGAAGAGAACAGAGAGTCGGGATGAGTTGGCATGGTGCATCATTAAATCCTTAAATAGGACCCTATCCTACGGGATGGGAGAGAGGTATTCAACTCTCCTTTATCTGGCATTATAGGACCCTAACCCACGGGATGGGAGAGAGGTATTCAACGCTCTTGGGAGGTTTCTGCCAAGTATACCACAGACACACCTATACCACAGACACACAAGTATACCACAGAAACACCAATCATTGAATACTTGACACTTAGCCCTGCTATACAATCAAGTTGCACAATATGCATGAGTTATGAAAGCTCACCTGCAACTcaccacctacagacccaccacctacagaccaaccacctagacccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405606 lncRNA upstream 692 393314 ~ 482303 (+) True G357352
TU405580 lncRNA upstream 58870 421843 ~ 424125 (+) True G357332
TU405572 lncRNA upstream 62212 401734 ~ 420783 (+) False G357329
TU405573 lncRNA upstream 62212 419827 ~ 420783 (+) True G357329
TU405610 lncRNA upstream 81401 398796 ~ 401594 (+) True G357353
TU405698 lncRNA downstream 29313 628592 ~ 629232 (+) True G357419
TU405715 lncRNA downstream 47215 646494 ~ 646821 (+) True G357426
TU405733 lncRNA downstream 59751 659030 ~ 659792 (+) True G357440
TU405751 lncRNA downstream 80980 680259 ~ 681503 (+) True G357455
TU405757 lncRNA downstream 90278 689557 ~ 698914 (+) True G357459
XR_005051596.1 mRNA upstream 66461 410761 ~ 416534 (+) False LOC110523070
XM_036976554.1 mRNA upstream 66461 410802 ~ 416534 (+) False LOC110523070
XM_036976555.1 mRNA upstream 66461 411112 ~ 416534 (+) False LOC110523070
XM_036976556.1 mRNA upstream 66461 411112 ~ 416534 (+) False LOC110523070
XM_036976552.1 mRNA upstream 170397 296626 ~ 312598 (+) True LOC110524922
XR_005051598.1 mRNA downstream 133732 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA downstream 133732 733011 ~ 735791 (+) False LOC110523098
XR_005051612.1 mRNA downstream 622384 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 622384 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 622384 1221663 ~ 1297401 (+) False LOC110523075
TU405617 other upstream 66466 411289 ~ 416529 (+) False LOC110523070
TU405615 other upstream 66552 411289 ~ 416443 (+) False LOC110523070
TU405616 other upstream 66552 411289 ~ 416443 (+) False LOC110523070
TU405618 other upstream 66552 411289 ~ 416443 (+) True LOC110523070
TU405294 other upstream 281353 200717 ~ 201642 (+) True G357136
TU405905 other downstream 339789 939068 ~ 939873 (+) True G357564
TU405906 other downstream 340956 940235 ~ 940741 (+) True G357565
TU406542 other downstream 789116 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 875516 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 1301084 1900363 ~ 1904878 (+) True LOC110523096

Expression Profile