RNA id: TU405781


Basic Information

Item Value
RNA id TU405781
length 3666
lncRNA type read_through
GC content 0.46
exon number 3
gene id LOC110523098
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 733011 ~ 737553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctttagaccagagccatttGGACCCTGGtctcaagtagtgcactatatagggaatagggggccccataggactctggtctaaagtagtgcactatgtagggaatagggggccatctggGATACATGTCCATGCTGGACCAATACATATGGCAGTGATAGTAACCTGGTCTCTGTGGGAACTCGGCTGGATAGTCAATCCTTGGGCGTTTCCTGTTGTGAATGTCATATTCCTCGGGCCGACGCCTACATGAATTAGGTAAACAATTGAGACAAGCACCACGATACAGCACAGCATCCTAGTTGCCCTTAAGTCATAATATAACTGTGTAAAACATCTAGTATCATCTGAAAagcatatgtatacatatatacaccaaAACATTTACATGAACTagtaacaaaaataaaaataaaaaacctaTTGACAGCTTGAGAAACAAATTGATTTTAGCCTTTTATCACCATTCTGTCTCTTCTGAGCTCATCCACCTCCATAAAGGGGGAAACTTAATTTATGACCAAAATTCAGGATGCATTTCATTGAATCTTGACAGTAttcccaaatatatatatatattttttaaacactaAACATGTATAGACAGTTATAATGAGCAGACTGCATCAATCAACCATTATATTCTGAATGATATCTGACTGAATCAACCATTATATTCTGAATGATATCTTACTGAATCAACCATTATATTCTGAATTATATCTTACTGAATCAACCATTATATTCTGAATTATATCTGACTGGTTGTGGACAGCTCCATTAAAACAGTGAATTGACCAGTAAGTTGTTTTTGTTCAGGTCGGTCCTATGATAGTTCAACTCATTCTGTAGCTAAAACAGGATGTTTACAGTACTGTAACTATTGGAAGTACAGCCTAGTTACCTGTTTGGGGACGGTTTGGGATATCACTTGTCTCCAATAAGGAGCTAGAGTTCTATTCTAACAGCTTCTGACTAGCCATCAATAACCACGTTAGCACTAAGTGAATGATCATTATTACTCCACAACACAACTTTCCATGTTCAATTCAAAAATCTACCAGATAGTAAAATGTTGTCGTGTTTGTTTTTACAGCTGGGATAATGACTGTCTACAGGAAAATGAAGAAAGAGCCGGTTAAAATTGTAACATACCGCTTTCTTGTAGTTTTGTGACCTGTTACCGTTGACATATATTAAGATATCAAAAGTTCATATAGAGACAGTCCATCTTACGGTTTAGGGTCTACAGCCACAAAGACATTACAAGGATGGGGCCGGGCTGGGGAGGGCAAAGGGGGTGATTGATAAGGGTGATTGATGCAGTCCATTGCAATCGAAAAGACCAGGGGATGAACTTCACGTCGGCCATTTTATAAAACCAAAAAGGTGACGGCCCCCTTTGGCTTAGAACATCCCTTCCTCGTGGTGTTATTCTCAGTCCATTGAGGCCTTAAAAAGGAAAGGAGTGGGGTTGTATCATTCTGCCAGTGGGTCTCCTCCTACCTTATTCTCAGTCCTTTAGGTTAGGGTATGGAAACACTCCTGTCCTTTAGGAAACACTCCTAACCTAGTCCTTTAGGTCAGGGTATGGAAACACTCCTGTCCTTTAGGTTAGGGTATGGAAACACTCCTGTCCTTTAGGAAACACTCCTAACCTAGTCCTTTAGGTTAGGGTATGGAAACACTCCTGTCCTTCAGGAAACACTCCTAACCTAGTCCTTTAGGTTAGGGTATGGAAACACTCCTGTCCTTTAGGAAACACTCCTAACCTAGTCCTTTAGGTTTCTCTAACCACCTACCACCAGGTGCCATTCATTCCAGATGAAGAAACTTTAACAAAGCTGGCAGGCTCTCTCAGCACCACAACCATCTCCAGTCCTGTTTGGTTGTGTGGGGGGGGAACAGTGACCGACCGACCATTAACCAAAATGTTTTTGCGGGTATATGATCTCTTGAAGGGGATGTCGGGGGATTTGGATTGCTGGTGTAAACGGAGCATTGCAACAGGAGGTAGAGAGAACCACACAGCAGAGccaagccctctctctctctctctctctctaggttgtCGCCAGGTCTCCCAAAAGGCCTACCGCTTTCCAGAACTTTCCaacgctttttttttttactcccttTCCAGGCAGCTTTGTAGATAGACACCCACCCCTGCCCATCTGAAGCTACAGGCATACACAGCAGTAGTGTAGACTTCACCACAGGTATACATGATGTATATTCAATAAATGGCccatggagggagagaaaagtcCCCTGGAAGCATTTAAGACAGCATCATCATTCTCCCCACTCAAATCCACGTGCCATCTTCTGCTTAAATAGAACGGCTCCTTTTTCTAAGTCCCATATATGACTAGGTTTTAACTCGCCAGGATACTCCTGAAAGAAAAGGCTTCGGgaacaaatttaaaaaaacagactTATCTAGACAAATTCATTCAAGCAACCTGAAGACACATGTATTAAAACGCAACTACAACTTAAGTGGTTTTAAGTATCATGATGGTATAAATTAAAATTGCATTCTTTATATTGAGAGATCAAACTAATTAACCACCATCACCTGTAGAGAGAGACAAGCCACACTCAGCCTACTAGCAATGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAATGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGGCCCGGCCCATAGATACTGGGGTTAGCAACGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGGGGTTAACACTGGCCCGGCCCATAGATACTGTGGAGCTGTGGTACGGGGTCCTTAGCAACAGCCCAGAGgatgtcagcaggtttccctcGTCGCTGGGATGTGATGAGAGCATTCTGGAAGGGGCGGTTAGACCCATCGGATCAGAACACTGCGCCGGGCATCATGTCACGCCGACACCAGAGCTCACTAGCAGTCCAAAGAATATTTCTAACCTTCCCAGGTCGCCTCGGGCGGGTTCTCTGTGCGGCGGGCGTCCTCGAGAACGCGGCTCCGAAGGCATCCTCCGCTTGTGTCGCATTTTATGAATAACTTGATACAAGTCAATGCTCTCGTCCTGGGGGAACAGCATGCACAGCTGCATCCCACACCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405792 lncRNA upstream 14058 719112 ~ 719685 (+) True G357475
TU405791 lncRNA upstream 14773 717051 ~ 718970 (+) True G357474
TU405793 lncRNA upstream 16835 716697 ~ 716908 (+) True G357476
TU405763 lncRNA upstream 24504 704685 ~ 709239 (+) True G357465
TU405762 lncRNA upstream 26167 704653 ~ 707576 (+) True G357464
TU405803 lncRNA downstream 25225 762778 ~ 768784 (+) True G357486
TU405820 lncRNA downstream 56676 794229 ~ 795596 (+) True G357498
TU405824 lncRNA downstream 66878 804431 ~ 805222 (+) False G357501
TU405827 lncRNA downstream 66878 804431 ~ 805222 (+) True G357501
TU405829 lncRNA downstream 67686 805239 ~ 806038 (+) True G357502
XM_036976565.1 mRNA upstream 134464 482981 ~ 599279 (+) False LOC110524924
XR_005051612.1 mRNA downstream 484110 1221663 ~ 1296700 (+) False LOC110523075
XM_036976585.1 mRNA downstream 484110 1221663 ~ 1297401 (+) False LOC110523075
XM_036976587.1 mRNA downstream 484110 1221663 ~ 1297401 (+) False LOC110523075
XR_005051613.1 mRNA downstream 484110 1221663 ~ 1297401 (+) False LOC110523075
XM_036976584.1 mRNA downstream 484110 1221663 ~ 1297402 (+) False LOC110523075
TU405617 other upstream 317214 411289 ~ 416529 (+) False LOC110523070
TU405615 other upstream 317300 411289 ~ 416443 (+) False LOC110523070
TU405616 other upstream 317300 411289 ~ 416443 (+) False LOC110523070
TU405618 other upstream 317300 411289 ~ 416443 (+) True LOC110523070
TU405294 other upstream 532101 200717 ~ 201642 (+) True G357136
TU405905 other downstream 201515 939068 ~ 939873 (+) True G357564
TU405906 other downstream 202682 940235 ~ 940741 (+) True G357565
TU406542 other downstream 650842 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 737242 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 1162810 1900363 ~ 1904878 (+) True LOC110523096

Expression Profile