RNA id: XR_005051615.1


Basic Information

Item Value
RNA id XR_005051615.1
length 345
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC118964548
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1228087 ~ 1232244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggatattaacatgttatcaacatagagagagagaggtcatccctGGATATTAACATGTTATGAACATAGAGAGAGGTCATCCCTGGATATTAACATGTtatcaacatagagagagaggggtcatccctggatattaacatgttatcaacatagagagagaggtcatccctggatattaacatgttatcaacatagagagagagaggtcatccctGTAGTATTAACATGTTATCAACATAGAGAGAGGTCATCCCTGGATATTAACATGTTATCAGGTAGAAGACAGAGTAGCCTCAAGGCTCAACCTAATCGTTGTAGAGCTCCACTCCATTTTTCCAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406469 lncRNA upstream 15389 1214021 ~ 1214494 (+) True G357986
TU406467 lncRNA upstream 17211 1212415 ~ 1212672 (+) True G357984
TU406456 lncRNA upstream 46560 1182754 ~ 1183323 (+) True G357973
TU406002 lncRNA upstream 63200 1166354 ~ 1166683 (+) True G357633
TU405999 lncRNA upstream 66112 1162936 ~ 1163771 (+) True G357630
TU406490 lncRNA downstream 2444 1234688 ~ 1235117 (+) True G357999
TU406494 lncRNA downstream 32130 1264374 ~ 1264818 (+) True G358003
TU406485 lncRNA downstream 44726 1276970 ~ 1277414 (+) True G357995
TU406483 lncRNA downstream 64674 1296918 ~ 1298618 (+) False LOC110523075
TU406484 lncRNA downstream 64674 1296918 ~ 1298618 (+) True LOC110523075
XR_005051620.1 mRNA upstream 1850 1227617 ~ 1228033 (+) True LOC118964551
XR_005051598.1 mRNA upstream 494092 733011 ~ 735791 (+) False LOC110523098
XR_005051599.1 mRNA upstream 494092 733011 ~ 735791 (+) False LOC110523098
XM_036976561.1 mRNA upstream 630604 503466 ~ 599279 (+) False LOC110524924
XM_036976588.1 mRNA downstream 13757 1246001 ~ 1249676 (+) True LOC118964547
XR_005051619.1 mRNA downstream 20581 1252825 ~ 1255902 (+) False LOC118964550
XR_005051618.1 mRNA downstream 20606 1252850 ~ 1255902 (+) True LOC118964550
XM_036976600.1 mRNA downstream 477299 1709543 ~ 1828943 (+) False LOC110523072
XM_036976601.1 mRNA downstream 477299 1709543 ~ 1828943 (+) False LOC110523072
TU405906 other upstream 289142 940235 ~ 940741 (+) True G357565
TU405905 other upstream 290010 939068 ~ 939873 (+) True G357564
TU405617 other upstream 813354 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 813440 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 156151 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 242551 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 668119 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 814430 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1384634 2616878 ~ 2617330 (+) True G359084

Expression Profile