RNA id: XR_005051619.1


Basic Information

Item Value
RNA id XR_005051619.1
length 2698
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118964550
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1252825 ~ 1255902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAGTAGTAAGTCTATGACAGAGTAGTAAGTCTATGACAGAGTAGTAAGTCTATGACAGAGCAGTAAGTCTATGACAGAGCAGTAAGGTATTGTGGCTGGAGAAGAGAGTTCCTTCACTTTAAGATGTGATTCCTTCTGGCTCCAGAGAGACATGTTTGTTGTTGAACTGGTGTTTCACAGTGCAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTATGGTTAGGTGTTTCACAGTACAGTAAGTCTGTGTTATAGGGTTAGGTGTTTCACAGTGCAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATGTTATAGGGTTAGGTGTTTCACAGTACAGTACGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGtgttttagggttaggtgtttcacAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTCTGTGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTCTGTGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGCCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTCTGtgttttagggttaggtgtttcacAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTCTGTGTTTGTGTTATAGGATTAGGTGTTTCACAGTGCAGTCTGTGTTTTAGGATTAGGTGTTTCACAGTGCAGTTGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGtgttttagggttaggtgtttcacAGTGCAGTAGGTCTCTGTTATAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTACAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTGTTATAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTCTGTGTTATAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTGTATTCTAGGGTTAGGTGTTTCACAGTGCAGTAGGTCTCTGTGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTGTTATAGGGTTAGGTGTTTCACAGTACAGTAAGTCTGTGTTATAGGGTTAGGTCACTTTATCAGCTGTTAAGGTACATTTCACTTTAGCTGCCTGTTTTGATGAAGTCATACACAGTAGTTGGCTGTTTCTCAAACACACCACTGCAGCTTGGCTTCTGTGTGGAGTGAGTTTGATCCTGCCATCACGTTGTTGAGAAGGCCATATAAAAGCATGTTGCCCAGTTTGCGCTGTACTAAGAGTTTGTGGGTttagttttgttgtttttgtgtgctTGCTTTTTTCCTGATTTGAAATCAATTGTTTGTGATCATAAAATGCGgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406490 lncRNA upstream 17708 1234688 ~ 1235117 (+) True G357999
TU406469 lncRNA upstream 38331 1214021 ~ 1214494 (+) True G357986
TU406467 lncRNA upstream 40153 1212415 ~ 1212672 (+) True G357984
TU406456 lncRNA upstream 69502 1182754 ~ 1183323 (+) True G357973
TU406002 lncRNA upstream 86142 1166354 ~ 1166683 (+) True G357633
TU406494 lncRNA downstream 8472 1264374 ~ 1264818 (+) True G358003
TU406485 lncRNA downstream 21068 1276970 ~ 1277414 (+) True G357995
TU406483 lncRNA downstream 41016 1296918 ~ 1298618 (+) False LOC110523075
TU406484 lncRNA downstream 41016 1296918 ~ 1298618 (+) True LOC110523075
TU406509 lncRNA downstream 53707 1309609 ~ 1309829 (+) True G358014
XM_036976588.1 mRNA upstream 3149 1246001 ~ 1249676 (+) True LOC118964547
XR_005051616.1 mRNA upstream 20581 1228087 ~ 1232244 (+) False LOC118964548
XR_005051614.1 mRNA upstream 20581 1229227 ~ 1232244 (+) False LOC118964548
XR_005051617.1 mRNA upstream 20581 1229362 ~ 1232244 (+) False LOC118964548
XR_005051615.1 mRNA upstream 20581 1229883 ~ 1232244 (+) True LOC118964548
XM_036976600.1 mRNA downstream 453641 1709543 ~ 1828943 (+) False LOC110523072
XM_036976601.1 mRNA downstream 453641 1709543 ~ 1828943 (+) False LOC110523072
XM_036976595.1 mRNA downstream 453642 1709544 ~ 1828942 (+) False LOC110523072
XM_036976594.1 mRNA downstream 453642 1709544 ~ 1828943 (+) False LOC110523072
XM_036976596.1 mRNA downstream 453642 1709544 ~ 1828943 (+) False LOC110523072
TU405906 other upstream 312084 940235 ~ 940741 (+) True G357565
TU405905 other upstream 312952 939068 ~ 939873 (+) True G357564
TU405617 other upstream 836296 411289 ~ 416529 (+) False LOC110523070
TU405616 other upstream 836382 411289 ~ 416443 (+) False LOC110523070
TU406542 other downstream 132493 1388395 ~ 1390468 (+) True G358042
TU406577 other downstream 218893 1474795 ~ 1475734 (+) True G358076
TU407062 other downstream 644461 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 790772 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 1360976 2616878 ~ 2617330 (+) True G359084

Expression Profile