RNA id: XM_036976595.1


Basic Information

Item Value
RNA id XM_036976595.1
length 9527
RNA type mRNA
GC content 0.53
exon number 47
gene id LOC110523072
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 1709543 ~ 1828943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAAGGCTTGTACTGTTTGGTCCTAACAAGCTTCATGGTCGGTCATGGAACTGCTGCAGTTCACATGCCTGCTTTTACTTATCAGCTTGAAATGTTTGACAGGTTTTGGCCAGCAGTGTGGGGGTAACCAGTGGCAGTGTGATGATGGAGCTTGTCTGCGTCTTTCCTGGCACTGCGATGGAAATGGCGACTGTATGGACGGCTCTGATGAAATGGCCTGCCCCTGTCCTAGGGGCCAGGTTGCCTGCATGGCCGGGGCTCCTGGTTGTGTAAGTACCTCTGCAGTATGTGATGGGCAGCGCCAGTGTTCTGATGGGTCTGATGAGTTTAACTGCCCAGAGAACCAGGGCTGTCTGCAGGGGGACTGGAGGTGTAGGAATAAGATCTGCATCCCCAAGGACCTATACTGTAACGGTGCTAACGACTGTGTGGACAACTCTGATGAGGCCTGTGGCCGGTGTGGGCCAATGGCTGTGCGTTGTCCTGGAGGGGAGTGTCTGACTGAAGATGAGAGATGTGATGGAAAATTGCACTGCTCTGATGGCAGTGATGAACCCTCTACCTGTGGGAGGACCTGTTCAGAAGAGAACGGTGGCTGCAGTCACTCCTGTGTGGATCAGCCCTGGGGAGCCCTCTGCTCCTGTCCTAAAGGCCATAGGCTGTCTGCTAACGGAGCCTCCTGTCTGGATGTGGATGAATGCGCTCTGGCTTATGGTCCATGCATGCACTTCTGTGTCAACACACCCGGGTCCTTCTACTGCCACTGCCGAGATGGCTTCCAGCTTCAAGGAACCACCTACTGCTATGCTAAAGAAAATTATACAAAGTTTCTGACTGCAAAGAACGGAACTATCGGATTTCTGAATCTGAAGACTCTGAGATTCGAGTCCATTCAGAGTACTGGCTATGACCCTCTGGCCCTGGCCTTTGACCTCTCCAGGAGCTCATTCTACTGGGCTGATAACCAGGGGAACATCTACAAGGCTAAGGAAAAGCAGCGCAGGATCCTTTATCATGGACAATATGGGGTTAGAAGTCTAGTCTGTGATTGGCTGACAGGCCAGCTGTACTGGACCAACCAGAAGACCCGGTCTATTCATGTTGGGGCAGCTGATGGGAGTGGATTTGCAACGGTCTTGGCCAAGAACATAGACCCGTTGGAGCTGGTCCTTCTTCCCATTGAAAGCTTGTTGTTTTGGATCAACAAAGGTCCAGGTGATAAAATTACTCTGGAGAGATCTGGGATGGATGGGATAAAGCAGGAATCTCTGGTGGTCCTCACTGCACAGGCTCCACGGAGTCTGACCCTGGACGTTACAGCTAGGAGGCTGTACTGGATGAGTCATTTTAAAAAGTCCATAGAGACTGTGCGAGTGGATGGGAGTGGTCGCTACAGCTTTCTGGAGTTCTTCAAGAGGAGACCAGCTCAGAGCCTGGCGGTGATTGAGAGGTGGTTCTACTGGACAGATCAGAAGGGTCTGTGGCGCTCCCCTCAGGACCGACCTAATCAGAAGACCTTTATTCAGAGGACAACACTCCCTGTCCTAGAGGCATACCATGAACAACAGCAGCCGAAAGcTCCATCAGCCTGTGTAAAGTCTGGCTGCCAGCTCTGCATGCTGACTCTGGACCTGCCTGCTGGGTTCACCTGTACCTGTCCTGATGACAAACTGCTCATGGCAGATGGCTCATGTGAATATCCCAGGTTTGCTTATGCAACATCCACAACACTGAACCTGTTTGAGTTGAAAGGGAAGGAGCTGATCAAGACCAAACTGCTGACTACGGATGACGTCATGGAGTCTTTTGACATCGACTGGAGGGGGGACTGGGTCTACTGGGCGAACAGCACTGGTCATGTGATGCGCTGGAGCCTCAATACCGGCCAAACAGAGACTGTCCCTACGCTGAAACCAGCCTGCGTGGTGTCAGTAGACCAGAAGATGAGAAATCTGTACTGGCTGTCATGTGATGAAGCCTGTGTTGGCGTCACTAACATGGATCAGGGTTACCCACGGAGACTGTACCAGTCAGGCAGTGAGGTAAGAGATGTTTATCTGGACTGGCAGCGGGGGAGGCTGTACTTGCTGGAGGCTGGTTGGATCCTATCCATGAGACTGCCAGGAGGAAACCCTAGGAAAGTCCTGAGAGTGGAGGGACACGTCGCTGGGCGCATTGTTTTGGACCTACAATCTAACACACTGCTCTGGAAAACAGAGGGGGACGATCTGAAGATCATGAGTCTGTTGAAGTCCCAGACTCACCTGGTAGGCAGAGAGTGGAATGTCCCTGGTTCCATCATGGCCGCTCACTCTCCGCTCCTGGTGTCGCTGTTTAATGATGTCATCACTGTGTGGGACCGGCGGGACAGGAGGCGTGTCCACGATGTCCCTGTCGGACCAGGCATTGTCAGGGTGATCGTGGCTCTGGATGTAAAGGAAGtgcctcctGCTCAGCCAGTCTGTATCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGGAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTACGGATGGATCAGATGAACAGGACTGTGGAGAATCTCCAGTTCCACTTACTACAGCTTATTTGGCTCCAACTACAACCGTTCCAGATATTCTTCCTGCTCAGCCAGTCTGTACCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGGAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTACGGATGGATCAGATGAACAGGACTGTGGAGAATCTCCAGTTCCACTTACTACAGCTTATTTGGCTCCAACTACAACCGTTCCAGATATTCTTCCTGCTCAGCCAGTCTGTACCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGGAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTACGGATGGATCAGATGAACAGGACTGTGGAGAATCTCCAGTTCCACTTACTACAGCTTATTTGGCTCCAACTACAACCGTTCCAGATATTCTTCCTGCTCAGCCAGTCTGTACCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGGAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTACGGATGGATCAGATGAACAGGACTGTGGAGAATCTCCAGTTCCACTTACTACAGCTTATTTGGCTCCAACTACAACCGTTCCAGATATTCTTCCTGCTCAGCCAGTCTGTACCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGGAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTACGGATGGATCAGATGAACAGGACTGTGAGCTCCTCTGCAAAGCAGGTCAGTTCCAGTGTGCTCATGGGAAGAAGTGTATCGACCAGCAGCAGATGTGTGATGGAAAGGCACAGTGCCAGGACCGTTCTGATGAAATGGACTGCTTCAAGGCCACCAAGAGCTGCAGTCATCGCTGTGACAACAATAGCCGCTGTATCCCAGAAACCTTCCtctgtgatggagagagggactgtGCGGACGACTCTGATGAGGAAGGCTGTGATTCTAACAAGgtccttcctcctgtcctgccaaCTCTGGCTCAGACCTGTACCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGGAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTACGGATGGATCAGATGAACAGGACTGTGAGCTCCTCTGCAAAGCAGGTCAGTTCCAGTGTGCTCATGGGAAGAAGTGTATCGACCAGCAGCAGATGTGTGATGGAAAGGCACAGTGCCAGGACCGTTCTGATGAAATGGACTGCTTCAAGGCCACCAAGAGCTGCAGTCATCGCTGTGACAACAATAGCCGCTGTATCCCAGAAATCTTCCtctgtgatggagagagggactgtGCGGACGACTCTGATGAGGAAGGCTGTGATTCTAACAAGgtccttcctcctgtcctgccaaCTCTGGCTCAGACCTGTACCAGTCCATCAGTGAGGTGTCGGGGCTCAACTTTGTGCATCTCCCAAACTCAGCTGTGTGACACATTGAGAGACTGCCCTGATGGTTTTGATGAGGAGTCCTGCATTACTAAATGTCCAAACCGAGgtgagtTCCGGTGTAAGGACAGGAGGAAATGTATTGAGAGGAGTCTGGTTTGTGATGGACGCGCTCATTGCCATGATGGCTCAGATGAGATTGGCTGTCCAACGATCGCTGCTCCAACATCCCAAACTGCGCCCCTGAAGTGCCGTATGGGTTCTAGACTGTGCAAGGATGGTAGAGAGTGTGTCCTGCACAGCCATGTTTGTGATGGAGAGGTGGACTGTAAGGATGGATCAGATGAACAGGACTGTGAGCTCCTCTGCAAACCAGGTCAGTTCCAGTGTGCTCATGGGAAGAAGTGTATCGACCAGCAGCAGATGTGTGATGGAAAGGCACAGTGCCAGGACCGTTCTGATGAAATGGACTGCTTCAAGGCCACCAAGAGCTGCAGTCATCGCTGTGACAACAATAGCCGCTGTATCCCAGAAACCTTCCtctgtgatggagagagagactgttcggACGGCTCTGATGAGGAAGACTGTGTGGCAAAGCTTTGTGGCCAGCAGCAGTATCATTGCAGTAatggtcagtgtgtgtctgaGGCTCTCCGTTGTGACGGCCATGCTGACTGCGGAGACCATTCTGACGAGGTGGGCTGTGCCAAACCCCCCCACTGTCCCCCGGAGCGCCGCTGCCCAAACAGCCATGAATGTCTTGTGGAGGAATGGCTGTGTGATGGGGAACAGGACTGCCAGGACGGTTCAGACGAGATGAATTGTAAGGTGTCTCCAGTGACGTGTGGGGAGTTCCAGTGGAGCTGTGTCTCTAAGACCCAGTGTATCCCTGCAACCTGGAGGTGTGATGGACAGCAGGACTGTGAGGACTACAGTGACGAGGCCGGATGTGACCAGTTGAAGTGCTCCAACCAACTTTACCAGTGTGGTAGTGGAGAGTGTGTGGACCATTCCCTGCTGTGTGACCACATCATCAACTGTCCTGATGGATCTGACGAGGGGCACGGTTGTTCCACCAATAACTGCTCCAGCCCTGGGACCCCCCAATGTGACCAGCACTGTGTCAGCACCCCTTACGGACCGAGGTGCATCTGTGCTGCAGGCTTCCGGCTCCAGGCTAATGGTTTGTCCTGTGTGGATGTTGACGAGTGTAATGAGGTCCTACCGCCTGTCTGCAGCCACACCTGCCTTAACACCCGCAGCTCCTTCCTGTGTCGCTGTCACCATGGATATCTGCTGGAACCAAATGGTCACAGCTGCAAGACCCAAGATGAGGCTCACCTGCTGGCATCTGTTCAGAATGAGCTGCTGGTGTTGGGGTTGCATAGCTCCAGCCTTTCATTGCTCTCCACTAGTCAGACACCTGTGTTCTGTGTGGATTATGACTGGAGAGACCAGAGGGTATACTGGGTCAGTCTGGAGGAGGAGAGCATCAAGTGGACTTCCATCAATACCAAGGACACAGGCACTCTGGTCAAAGGTGTGAAGTCTGAGTCTATAGCTGTGGACTGGGTTGGCAGGAACCTGTACTGGCTGGATGGGCTGGCCAGTCAGATTCTGGCTGTGAGGCTGGGCACATCTACAGTAAAGTCTCAGAACTACATAGTGGTTCTGGATGAGGATCTGGAGCAGCCTCGCTCACTACTGCTCCTGCCACACAAAGGGTTGATGTATTGGTCAGAGGTTGGTAGCGATCCCCAGATTGAGCGTTCAGGGATGGATGGCTCTGAGAGGAAGGTGGTGTTGACTCGTGGTCTAAGCTGGCCAGTCAGTCTCTCTGTGGACACTCTCACTGACCGAATCTACTGGGCAGATGAAAAACTGCAGTGCATCGGCTCTGTATCCCTGGAAGGACACAATGTCAGGCTTCTGCAGCTGACTGAAATGCCCAGTCCATTCTCTGTAATGGTTTTCAATGACATGGTCTACTGGTCTGACACCAGGAGGAGAACTATTCAAGTATCCCACAAGAACACGGGCAAGAACCGCAAAGTTTTACTCAAAAGACCTGGACAGCCTTTTGGCATCAGGATTATGCACCCCCTCCGGCAGACCAATGTGTCCAGCCCCTGTGAGAAGCTCCAGTGTTCCCACATCTGTCTCTTGGCTCCAGGACTGTCTACAGGCCCCAGAGCTGGGTCTACGGGACCCAAAGCTGTGTGTAGATGTGCTGCTGGACTTCTCCTGGCTGGGGACGGCCTCACCTGCTCCACCCTTGTAGACACCACTTTCCTCTTGCTCCTCTCTCCTACTGCAGTTACACAGATATATCTTAGCACCATCCATAATGGTGTGGGGTTGAAGCGGTTGCCTGAGCACCATATATGGTCTCTGCCGTGGACGCACCAGGCCTCTGGGCTGGATTTGGCTGTACAGGAGAGGAATTTATACCTGGCTGATGCTGCGCAGGGCTCAGTCGATCTCCTGAAACTGAGTAGCTCAGGCCTGACACCAGACAGCAGAGTCCTGAATCTCCAGGATGATACAGTGATGGCTCTGGCTGTGGACTGGGTCACACTAAACTTGTACTGGAGCAGCAGGAAGCAGCCTGACCTACATGTCACCACCACCAGGGGGCAGCACACTGCACCTCTACTCCAACTAGGCCTTCAGGGAACCACCTCCATCGCCCTGCACCCCCCCTCAGGACGCCTGTGCTTCACGGCCTTGGGCCAGGTGAATGTGAGGAGCCTGCCGCAGGTGGACTGTGCCTTCATGGATGGACGTAGTCAGAAGCTGCTCTGGAGGAAGGCTGTGATGCCAACCTCCCTTCTGTTCTCCAACAAGGGCACTCGGCTGTATTGGGCTGACATAGGTGCTGGAGTAATCGACTCCATTCTTCTGGATGGTTCTGGATATAAACAGTTTAAAGCAGATCCCGGCCTCATGTCCTTCACACTGGCTGAGAACGTCCTCCTGTGGAGCAGCCTGGATAAAGATGTGACTAGAATCTGGTTCAGTGATGGATTTCAGCCCAAGCAGCTGTTTGAGGTCAATACCAATGTGGTGGCACTGAGGGTTTACAGCAAAACCAGTCAGAAAGgAACTAACAGCTGCTCAGAGCGAAACGGAGGCTGCAGTCAGCTGTGCCTGGCCTACCCAGGGGGGCGTAGCTGCCGATGTGGACGTGGTTACCAACCTGTCGACACCAACACGTGTagcccctttccctccctccagtGTCCAGAGGGCAGCAGGGCCTGTAGCGACGGCAGCAGGTGCCTCCCCCTCACAAAGTTCTGTAACCACCAAACCGACTGCCTTGACCATTCAGACGAGATCAAATGTTGGTCTGGAGTGAAGCCCCAAGATGTCAGCCATAGTAAACCTTCCCCGGGGCATGCTGGGAACACCGTCCCCCCTAGCCAGGACTGGTCTGGGAGGACCACCCCCGGGGGGGTAGAGGTGCAGAAGCTGGAGTCATGTGATGCCCAGCAGTGTAATGGACATGGGAAATGTGTGGCAAGGGGTGGAGAAACCACCTGCCAGTGTGTTTTGGGATACCATGGTGTGTTCTGTGAGGAGGGTGAGGGTCCAGGGGTCAGTAATGCCCCCCTCACTTTAGGCATCCTCAGCCTCATTGGTGGAGTCCTCATCGCTGCTGTCATCATCTGGAAGAGAGCAAGAGCTGCAGCTCGGGGCCAGTCCACAGACAAGGAGACTCTGATGACCAATAAGGATGAACAGACAGTCTACGCTGTGTCTTTCAACAACGATCTGTATGATCCTGACCAGgaatTGATCTCGTCTGCTGATGGGACATCTCAACATCTGTAAATGTTGCATTTTCTCTTCTGCTCTGAAATAAAGTCTAGGATGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406855 lncRNA upstream 301 1708496 ~ 1709243 (+) True G358295
TU406842 lncRNA upstream 11242 1698084 ~ 1698302 (+) True G358282
TU406785 lncRNA upstream 111119 1560081 ~ 1598425 (+) True G358230
TU406757 lncRNA upstream 200752 1508112 ~ 1508792 (+) True G358215
TU406575 lncRNA upstream 240490 1468355 ~ 1469054 (+) True G358074
TU406899 lncRNA downstream 5453 1834395 ~ 1840629 (+) True G358319
TU406901 lncRNA downstream 7455 1836397 ~ 1842114 (+) False G358320
TU406895 lncRNA downstream 8342 1837284 ~ 1875702 (+) False G358318
TU406902 lncRNA downstream 11790 1840732 ~ 1871533 (+) True G358320
TU406896 lncRNA downstream 25697 1854639 ~ 1875702 (+) True G358318
XR_005051609.1 mRNA upstream 412062 1221663 ~ 1297482 (+) False LOC110523075
XR_005051610.1 mRNA upstream 412093 1221663 ~ 1297451 (+) False LOC110523075
XM_036976584.1 mRNA upstream 412142 1221663 ~ 1297402 (+) False LOC110523075
XR_005051611.1 mRNA upstream 412142 1221663 ~ 1297402 (+) False LOC110523075
XR_005051613.1 mRNA upstream 412143 1221663 ~ 1297401 (+) False LOC110523075
XR_002473398.2 mRNA downstream 68416 1897358 ~ 1904914 (+) False LOC110523096
XR_002473397.2 mRNA downstream 68419 1897361 ~ 1904914 (+) False LOC110523096
XR_002473396.2 mRNA downstream 71335 1900277 ~ 1904914 (+) False LOC110523096
XM_036976604.1 mRNA downstream 637189 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA downstream 637189 2466131 ~ 2494286 (+) False LOC110523104
TU406577 other upstream 233810 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 319076 1388395 ~ 1390468 (+) True G358042
TU405906 other upstream 768803 940235 ~ 940741 (+) True G357565
TU405905 other upstream 769671 939068 ~ 939873 (+) True G357564
TU405618 other upstream 1293101 411289 ~ 416443 (+) True LOC110523070
TU407062 other downstream 71421 1900363 ~ 1904878 (+) True LOC110523096
TU407205 other downstream 217732 2046674 ~ 2047025 (+) True G358596
TU407791 other downstream 787936 2616878 ~ 2617330 (+) True G359084
TU408046 other downstream 1172332 3001274 ~ 3002082 (+) True G359294
TU408069 other downstream 1270621 3099563 ~ 3107196 (+) True LOC110524930

Expression Profile