RNA id: XM_036976606.1


Basic Information

Item Value
RNA id XM_036976606.1
length 3550
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC118964552
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 2655698 ~ 3017288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCAGTACAGAGCCagacactgacagagagacacaaaAAGCTCACCTCGTCCTGCTCACACATCAACCAACCTTTTAACCCTACAGCAACTTTCTGGATTGGAGAAACACACAGTGTCATTAATACAGAGGAACGAGGAACAGGATAGCGAGAGTGCACGAGAGGAGAGCGCAAAATATTTAAAaTGGCCAACACCGTAACGTTGCTGTGCTGTGTAGTgctagctgctgtggtggtggcatACGCGCAGAGACGCAACCAGACAGggGCCAGTATTCAGTATGAGCGTATGGATGGGGACGTGACCATGAGGTGTGGCTCTCTGGACAGCGATGCCAGCGTGACGTGGAAGGTAAACGGGACGGACGTGAAGGCACACCACCGGGAGGAGGGGTCTAGACTCATACTAATGGAGGTGGACCTCTCAAACAACGGACTTTACAGCTGCTTTCAGAACCCCAATGGAGAACGACGGGACCAGATCAACCTGCGCATCGGAACCTCACCAAGGGAACCCACGGTGACGTGTCGGTCCAACACCTACCCTAAAGGTTTCTACTGTAGCTGGCACCTACAGCACCCCACCTCCATACCCACAGACTTCGACGTCACCGTCCTacacAACCAGGAGTCCCTAGAAGTAACAAGGGATGTGGTCCATAAGAACCGCTGCCACGTTCTGTTCCCTGAGGTGTTCAGTAGCTACCCCTACAGAGTCAACGTTACAGCTGTCAACGCCCTGGGAAAAgcctccaccaccatcacctttgAAGAGATCAACATAGTGAAACCAGACCCCCCTGAAAGGGTGGTGGCCACTCCCATCCCCAGCAACGTGCGTCGTTTGGAGGTCACCTGGAACAGTCCCTCTACCTGGCCTGATGTAGAGATCTTCCCCCTGAAGTACTTCCTACGatacagacccctcatcagagaCCAGTGGCAACACGTGGAGTTGACAGACAGTACGGCCCACACCATAACGGATGCGTACGCGGGGAAGGAGTACATCATCCAGGTGGCGGCTAAGGACATGGAGATCGGCACCTGGAGTGACTGGAGCGTCGCGGTGCACGCCACCCCCTGGATGGACAAACCCCAACAGATCCCCTTCACCACCGAGCAGGAACCACTCCTCGAGACTACCCCCTCCCCGGCCCCTCCCTCAGCAGAGCCCCATAGGGCAGGTGTCCCAGTGGGCAGAGCTTCATCGTCCCGACacctcccctcacccctcctctggtCCTCCTGTCTGCTGCAAGGGGCCCTAACTCTGGCCCTGATATGatGTTTTATTCCTGTGGAAGAAATTGAGGAGTCTTCTTCGTCTATTTTGCACATATTAATGGACATCCTGCATTGATCATTTATTTCAAGTTTCACACAACATTAAATAGAAAGTGAAGATGTGATGAAGTCAAAGTTAAAAGAAAAGTTTTCTACAGAAACAAACCCCCATCAACTactcacaacaacaacagcaggtactaacagcagaactacagtactGCACAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACATCTCAGAAGCAGACATCATTGATTGGACACCTCAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACATCTCAGAAGCAGACATCATTGATTGGACACCTCAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACACCTCAGAAGCAGACATCATTGATTGGACACCTCAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGACATCATTGATTGGACACCACAGAAGCAGACATCATTGATTGGACAACACAGAAGCAGGACTGTGTCTCCATGGAGCTCCAGGCTTGTTAGTGGATCTGAGACTGTTAAGACTTATCCTCAGCAGCACAGTGGACTGATTCCATTCTccaagtaaaaaaacaaaaaacttttTCATTCATTATTCAGTGAATTTTGAGACACTTGTAAGAGATCCCAAGATCCCGTTTGTCATCATTTGTGGTGACATACAGCTAACTCATCATGCCAAAGACTTGTCTTGGAGAAGGTTTCCCACAATCCTCAGCTTCCTTAAGCCTGTGCCTGTGTAGAAGGGATGGAACCCAGAGAATTCCAGGATTCTGTATCTGACATCCGACAACCAACATGACGTCAcgatataaacaacaacacatgacataaacaacaacataacagagAACTAAAACACACTTTGGAGAAATCCTGAATAAGAGTTCTATAGCTTTCTATTGCACCCAGCGATCACCAAGAGAGTAGAGCTGTTAAAACACAGTGGATTTGAGAGCAATTCATCTCCATCATCGTCGTCTGTTTGCGACTTTACTATTTGAGGAAGTAGATTACCATACAATACATGACTTTAAAAGAATAAGGGTATATCAGCAAAAAGTTGATTCTGAGGTAATTGGCTTTAATGTTCCGAAACCTCATTGGTTTGAACGGTGTGATCAATTTTAACGTGTAGTCTTTACCAACATATTTACAGCACTATATAGGTAGACAttgtacagaacaaaaatatatatttcaataaCTCAATAACATAAATGCAGATAGAACCATTCAATTCCAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATATACTCTGTAGAAAGACAAGCTCTCGATTAGGCCCTCAGTCCTCTGGCAGGTGGACTATACAATTTGTAGAAAGACAAGAGTTTAATTTATAGTTCCATTGACttttcaaaatgtgtttttgcagTTTACATTTTAATAGCCAATATCACAAGTTCATATTATTACAAGGAATACTGTTGTGCTTTATTACATGTTTAATATTGAATaataaaatacacacacaggacctacacacacacacacaca

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
K05059 CNTFR; ciliary neurotrophic factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407801 lncRNA upstream 25998 2629427 ~ 2629700 (+) True G359094
TU407765 lncRNA upstream 62302 2592738 ~ 2593396 (+) True G359063
TU407732 lncRNA upstream 106290 2549207 ~ 2549408 (+) True G359033
TU407729 lncRNA upstream 107656 2547746 ~ 2548042 (+) True G359030
TU407707 lncRNA upstream 118187 2534593 ~ 2537511 (+) True G359010
TU408063 lncRNA downstream 42055 3059343 ~ 3059900 (+) False LOC110524930
TU408067 lncRNA downstream 42055 3059343 ~ 3059900 (+) False LOC110524930
TU408092 lncRNA downstream 59751 3077039 ~ 3079967 (+) True G359323
TU408102 lncRNA downstream 96367 3113655 ~ 3121918 (+) False G359328
TU408103 lncRNA downstream 96367 3113655 ~ 3117315 (+) False G359328
XM_036976604.1 mRNA upstream 161412 2466131 ~ 2494286 (+) False LOC110523104
XM_036976605.1 mRNA upstream 161412 2466131 ~ 2494286 (+) False LOC110523104
XM_036976602.1 mRNA upstream 161412 2470708 ~ 2494286 (+) False LOC110523104
XM_036976603.1 mRNA upstream 161412 2470708 ~ 2494286 (+) False LOC110523104
XR_002473398.2 mRNA upstream 750784 1897358 ~ 1904914 (+) False LOC110523096
XM_036976607.1 mRNA downstream 15561 3032849 ~ 3107239 (+) False LOC110524930
XM_036976610.1 mRNA downstream 15561 3032849 ~ 3107239 (+) False LOC110524930
XM_036976611.1 mRNA downstream 15561 3032849 ~ 3107239 (+) False LOC110524930
XR_005051623.1 mRNA downstream 15561 3032849 ~ 3107239 (+) False LOC110524930
XR_005051624.1 mRNA downstream 15561 3032849 ~ 3107239 (+) False LOC110524930
TU407791 other upstream 38368 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 608673 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 750820 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 1179964 1474795 ~ 1475734 (+) True G358076
TU406542 other upstream 1265230 1388395 ~ 1390468 (+) True G358042
TU408069 other downstream 82275 3099563 ~ 3107196 (+) True LOC110524930
TU408186 other downstream 199656 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 207769 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 207769 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 212306 3229594 ~ 3237305 (+) True G359371

Expression Profile