RNA id: XR_005051624.1


Basic Information

Item Value
RNA id XR_005051624.1
length 2838
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110524930
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3032849 ~ 3107239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGCTCCGCTTGTCCAGGAGAAGATTATCTACGGTTCGGAAGGTAAAACTCGACAAAGTTGAAGCCATGGCTCACAACCACTCAAAAATGCCCGTTTAACATTTGAAGATATTGAAGaTGCCCGGTCTCGTGTCCTGTCCCGGTGGTCTGATAGTCAttggtctcctcctcctccattcctcctccgtgAACACCCTTTCAGAGATATGGACCAATGAAGATGTTCAGTACGGGAGGATAGGGTCCAACGTTACGCTGCTGTGTAGAGACGCACTGGACAGGACGTCAGTAGAGTGGCGACTGAACAGGAGGTCCGTGTTGCCATGGCAGCACCGAGTGACATCAGGCGGTCATCTGGTCCTCGTGCACGCAGAACACGCTGCCGAGGGTAACTACAGCTGCCATGACGAGCAGGGACTCCTCATCCAGACCACCAGACTCAGGCTAGGATATCCCCCCAGTCTGCTCAGCATTTCCTGTCTTGTGCCCAATCACAGCCTAGTATTGTGTTCATGGGTGGAGTCTGTGAAGACCCACCTACCAGCCCTGTACCACACCTCCTATAGGGGTAATAAGAGCCAGGTGAGGATGTGTGTGGTGTCGTCCCCTCCCCAGAAGCAGTGCATCATCACAGACCCTGCCATGTGGCAGCTCTACCACTACATCAACATCACCGAGACCAACCCTCTGGGGTCACAGACCACCATCATTCAGGTCAAGTTCCACAAGCTCTTGCAGCCAGACCCCCCAGAGGCAGTAACAGCAGTGGGGATGGTAGGATATCCCATGAGGCTCCAGGTGTCCTGGACGAACCCTGCCTCCTGGCTCCACGACGCTGTGCCCTTCCCCCTCCACTTCCAGCTCCGCTACCGTCCTGTAGGATCCAGCATCTGGTCTACCGTCAGTTCCTCTagtcatcacctctcccctccctaccGTCCTGTAGGATCCAGCATCTGGTCTACCGTCAGTTCCTCTagtcatcacctctcccctccctaccGTCCTGTAGGATCCAGCATCTGGTCTACCgtggAGTCTAAGGCCAGTGCCCTGCTCATAACCGACGCCCTTGCTGGCCACGCCCACCAGCTACAGGTGAGAGCCCAGGACGAGATCAACCCAGACAGCCAGTGGAGTGACTGGAGCCCCCTGCTGCAGGCCTGGCCATGGAGCGGTTGCACAGCAGATCCAACTGAACAAATCGTCCCTGTAGACTACAATGACAAAGATGCGGAGCCCTCTACAGCCAACACCAAGTCAGAGAatTCGGAGGATGATGGTGGTAATCTGGGAGTGGTGATATTTCTGTCCCTGTTTGCTGTCATCATCATTTTCTTGTTGTCCTCTCTATTTGTCCTCATGTGGGTGAGGCAATGGAGGCGGGACAATGTGACACGACAGGAACTGACCTCAATGTTGAAGATGAAGTCCTGCATATCTGAAcCTAGGTTGGCCCCTCCTCTCCACCAGGCCATACCTCTACCAGCTGTCTGCAGCGTCCACAACACACTACCCACAACCTACCAGGAGACTCACCACGCTACCCACAACCTACCAGGAGACTCACCACGCTACCCACAACCTACCAGGAGACTCACCACACTACCCACAACCTACCAGGAGACTCACCACGCTGCCAACAACCCATCTGGAGTGAGTGCTTGGCCTGGTCGCTGCCTGCCGATAGACAGACATGATGGACCGACTGACTGACTCCTCCCACTGGAGTTCAACCTCTTCTGATTGGCTGTGGGCCTCAGTGACAGTACAGCACCAGTAAACATGAAGTCAAAGGAAGGAGGGATtagtatctgtctgtctcctcccctgactgactgactgaacaagGTTCACATTGTATTCCTGATGATGGTCCTTTATTACTCGTGACTAATGGAATGctgaaagaggagaagaagaaacaaGAGTTTTCCAATTTTCTAAAGCAAAAGGCATTACCGATATATAGACCGGTTGGCAATATAGACAGGTTATAAACAGGTTATAAAGAGGTTATAGACAGGTTGTGGAGAAGTTATAGACCGATTGGCAGTATAGACAGGTTATAAAGAGGTTATAGACAGGTTGGCATTCTCTTTACTTCAGCAGAAAAAGAGAAGGAACACTCTGCAAGGCTACTGCTATTGGTCAGTGGTTGAGAAAGAGGAGTCCTGTCATTTCCATGCTGACCAGTCACAGACAGTGTCAGGACGATGTCATTACttaatgtgtgtatgtgggtAGCTTGAGGTTACATTGGTCTGGGAACAGTTATCCTCTCTCCCGACCCCGACCAGACGTAATGTGGCCCCACCAACCAGCATGACATCAGTTCTCCTCCGTCCCGTTTCCCAACATCCCACAGCGTTATTCTGCTCTAAATGACAGTGATAGTGATGTTATTTGTTGGTTTCTTTACATCGCTGTGTAGTCATGGGAAACACAAGGTGTCTTTACTTAAAGAGTTAAAGCCTCGCTGGGTGTCTTTGAGGACTACAAGGTTCTCTCCAGCTAGTACCTATGCATGGATCCTGTTGAAGATTCTTCTGTGTTCTATCTTAACCAACAGAGTTAAATGTAGTTCATGTATATATTCTGTTGTTTTTAGAGGCTGTTCCACTGTGCACCATTCCCCAGTCAATGATATGAAGCTCTAATGCACTAGATGTCCCAGTGTGTTTGTTCCTATACATCCCAATTGGCACCATGTGCCCTAAATACAGTGAGCTCTAAAATAAATGGGACAGTGACATTTTtattgttggatgcatttgctatttgttttggttgtgttttagatcATTTACCCAATAAtaatgaatggtaaatcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU407943 lncRNA upstream 51987 2979184 ~ 2980862 (+) True G359209
TU408029 lncRNA upstream 54718 2977620 ~ 2978131 (+) True G359277
TU408026 lncRNA upstream 58262 2974300 ~ 2974587 (+) True G359274
TU408021 lncRNA upstream 74279 2957923 ~ 2958570 (+) True G359269
TU407921 lncRNA upstream 254567 2777309 ~ 2778282 (+) True G359187
TU408102 lncRNA downstream 6416 3113655 ~ 3121918 (+) False G359328
TU408103 lncRNA downstream 6416 3113655 ~ 3117315 (+) False G359328
TU408105 lncRNA downstream 6416 3113655 ~ 3119171 (+) True G359328
TU408101 lncRNA downstream 20179 3127418 ~ 3128171 (+) True G359327
TU408110 lncRNA downstream 32404 3139643 ~ 3143377 (+) True G359333
XM_036976606.1 mRNA upstream 15561 2655698 ~ 3017288 (+) True LOC118964552
XM_036976604.1 mRNA upstream 538563 2466131 ~ 2494286 (+) False LOC110523104
XM_036976612.1 mRNA downstream 32803 3140042 ~ 3148590 (+) False si:busm1-57f23.1
XM_036976613.1 mRNA downstream 33179 3140418 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601519.2 mRNA downstream 33420 3140659 ~ 3148590 (+) False si:busm1-57f23.1
XM_021601518.2 mRNA downstream 37898 3145137 ~ 3148590 (+) True si:busm1-57f23.1
XM_036976617.1 mRNA downstream 151692 3258931 ~ 3329266 (+) False musk
TU408046 other upstream 30767 3001274 ~ 3002082 (+) True G359294
TU407791 other upstream 415519 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 985824 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 1127971 1900363 ~ 1904878 (+) True LOC110523096
TU406577 other upstream 1557115 1474795 ~ 1475734 (+) True G358076
TU408186 other downstream 109705 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 117818 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 117818 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 122355 3229594 ~ 3237305 (+) True G359371
TU408266 other downstream 240270 3347509 ~ 3379319 (+) True G359438