RNA id: XM_036976613.1


Basic Information

Item Value
RNA id XM_036976613.1
length 904
RNA type mRNA
GC content 0.45
exon number 5
gene id si:busm1-57f23.1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 3140042 ~ 3148590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatttctgcccctcgagaatacgaccaagggaaggtccgaaaacacattatggagactatcatcggattataggatgtgccaatgtttgaacaattcccttaatttgttcagagcactttgaatagcgggtagttagaacgcaagaatgcgtctttttgcgagactgaccctgaaaaagCTTCATCTAACTGCCCAGGATACCATAGCACCATGGCTCCCCAGTTGTTGCCGTTGTTGTCTCTGGTCTCAACTCTCTACCTGGTGGCCCAGGGACAGGAGCAGCCTCAACCCATAGAGGAGGAACCTATCACAGCGAAGAACATCCAGCTTCTGGGTGGCTGGTTCAGCAGAGACCCAGAGAGCCTGGAGGTGCAGACCACTGCTAAAGCTGCTGTGGACCACTTTAACACCCAGTCTAATGCCAGGAAATTCTTCAGACTGATCAATGTCATCTCTGCTGAGACTCAGGTGACTAACATGATCAACTATAGGATCGAGGTGATCATCGGGAAGACCAAGTGCCTCAAGACAGAGCACAACTCAGATGTGGAGTCCTGTGTTCTGGGGAAAAAGCGCCTGACATGTACATTTGAGGTGTGGTTTAACCCTCGCAATGAAAAGTACGAGATCACCAACTCCTCTTGCCAGAAGCAAATCTGACTCCAGATCAGTTTCAACCAACAACTACATgatctgtcctcttcctcctgtaATAAGTAACACTGACTCTAGACCAGTCATCACAGTCTACTGACTACCTGAACATGACAATGACTATCTACAGAGTTACGCTACAACGGAATGCTTCATCATTGAATGACTTGACTTTTCAAAACTGCTTAGATTTCTTTTAGGATTTGATGTGATTTTGTTTCTAATAAAATCGTTTTCAACTGACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU408101 lncRNA upstream 12247 3127418 ~ 3128171 (+) True G359327
TU408102 lncRNA upstream 18500 3113655 ~ 3121918 (+) False G359328
TU408105 lncRNA upstream 21247 3113655 ~ 3119171 (+) True G359328
TU408103 lncRNA upstream 23103 3113655 ~ 3117315 (+) False G359328
TU408092 lncRNA upstream 60451 3077039 ~ 3079967 (+) True G359323
TU408119 lncRNA downstream 2838 3151428 ~ 3151728 (+) True G359341
TU408128 lncRNA downstream 6120 3154710 ~ 3158237 (+) False G359343
TU408129 lncRNA downstream 6120 3154710 ~ 3158237 (+) False G359343
TU408132 lncRNA downstream 6120 3154710 ~ 3158237 (+) False G359343
TU408133 lncRNA downstream 6120 3154710 ~ 3158237 (+) False G359343
XR_005051623.1 mRNA upstream 33179 3032849 ~ 3107239 (+) False LOC110524930
XM_036976617.1 mRNA downstream 110341 3258931 ~ 3329266 (+) False musk
XM_036976618.1 mRNA downstream 112950 3261540 ~ 3329266 (+) True musk
XM_036976532.1 mRNA downstream 399358 3547948 ~ 3635115 (+) True grin3a
XM_036976627.1 mRNA downstream 1412760 4561350 ~ 4567030 (+) False LOC110523122
XM_036976626.1 mRNA downstream 1412760 4561350 ~ 4598573 (+) False LOC110523122
TU408069 other upstream 33222 3099563 ~ 3107196 (+) True LOC110524930
TU408046 other upstream 138336 3001274 ~ 3002082 (+) True G359294
TU407791 other upstream 523088 2616878 ~ 2617330 (+) True G359084
TU407205 other upstream 1093393 2046674 ~ 2047025 (+) True G358596
TU407062 other upstream 1235540 1900363 ~ 1904878 (+) True LOC110523096
TU408186 other downstream 68354 3216944 ~ 3217529 (+) True G359369
TU408187 other downstream 76467 3225057 ~ 3229530 (+) False G359370
TU408188 other downstream 76467 3225057 ~ 3231615 (+) True G359370
TU408189 other downstream 81004 3229594 ~ 3237305 (+) True G359371
TU408266 other downstream 198919 3347509 ~ 3379319 (+) True G359438

Expression Profile